Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 6.2e-135 484.2 254 100.0
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.9e-84 315.8 224 72.3
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.8e-63 246.1 156 78.8
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.1e-62 242.3 179 70.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.6e-61 240.4 186 66.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.5e-61 239.2 174 69.0
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 7.7e-61 238.0 155 76.1
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.3e-60 236.5 156 76.3
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.3e-60 236.5 262 53.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.3e-60 236.5 171 71.3
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.5e-59 233.8 183 64.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 7.3e-59 231.5 211 59.7
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 9.5e-59 231.1 252 55.6
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.4e-57 227.3 228 57.0
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.3e-57 226.5 183 63.9
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.0e-57 226.1 157 70.7
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 3.0e-57 226.1 150 72.7
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 4.0e-57 225.7 240 51.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.2e-57 225.3 240 50.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 8.9e-57 224.6 157 70.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.2e-56 224.2 248 53.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-56 223.8 254 50.8
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.0e-56 223.4 249 53.4
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 4.4e-56 222.2 254 52.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 7.5e-56 221.5 150 71.3
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.3e-55 220.7 153 69.9
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.3e-55 220.7 169 65.7
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.3e-55 220.7 251 53.4
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.2e-55 219.9 261 52.5
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 6.4e-55 218.4 167 65.3
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.4e-54 217.2 157 70.7
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.4e-54 217.2 157 70.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.8e-54 216.9 173 65.9
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.4e-54 216.5 178 63.5
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 5.4e-54 215.3 168 64.9
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 9.2e-54 214.5 156 68.6
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.6e-53 213.8 173 64.2
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.0e-53 213.4 155 69.0
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.7e-53 213.0 250 49.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.5e-53 212.6 153 67.3
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 4.6e-53 212.2 156 68.6
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.0e-52 209.5 156 69.2
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 5.0e-52 208.8 174 62.6
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.1e-51 207.6 157 66.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.9e-51 206.8 165 63.0
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.3e-51 205.7 153 66.7
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 4.3e-51 205.7 150 67.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.3e-51 205.7 147 70.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.2e-50 204.1 170 60.0
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 3.6e-50 202.6 173 59.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 8.0e-50 201.4 153 66.7
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.8e-49 200.3 181 58.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.3e-49 199.9 149 67.8
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 4.0e-49 199.1 153 62.1
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 5.2e-49 198.7 191 57.1
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-48 197.6 148 64.2
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.5e-48 197.2 191 56.5
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.0e-48 196.8 154 60.4
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.6e-48 196.4 160 62.5
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.6e-48 196.4 152 63.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.6e-48 196.4 206 53.9
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 3.4e-48 196.1 148 64.2
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 4.4e-48 195.7 207 52.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-47 194.1 169 59.2
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-47 194.1 158 63.3
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.9e-47 193.0 149 62.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.7e-47 192.6 152 63.2
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 6.4e-47 191.8 250 48.0
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 6.4e-47 191.8 154 59.1
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.4e-46 190.7 178 56.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.4e-46 190.7 153 62.1
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 7.0e-46 188.3 152 61.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 9.2e-46 188.0 149 65.8
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 1.2e-45 187.6 170 55.9
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.6e-45 187.2 167 56.9
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.7e-45 186.4 153 63.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.7e-45 186.4 156 61.5
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.7e-45 186.4 155 62.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 6.0e-45 185.3 172 59.9
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.7e-44 183.7 157 60.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.7e-44 183.7 155 63.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 3.0e-44 183.0 170 55.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 8.6e-44 181.4 180 50.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.1e-43 181.0 169 59.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.9e-43 180.3 167 56.3
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.3e-43 179.5 149 61.7
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 5.6e-43 178.7 113 76.1
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 7.3e-43 178.3 152 55.9
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 8.1e-42 174.9 180 53.9
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 8.1e-42 174.9 150 59.3
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.8e-41 173.7 169 54.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 4.0e-41 172.6 161 55.3
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-40 170.6 170 54.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.0e-40 170.2 254 42.9
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 2.0e-40 170.2 154 55.2
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 2.0e-40 170.2 148 58.8
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.8e-40 168.7 253 43.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.8e-40 168.7 254 44.1
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.5e-40 168.3 236 45.8
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 9.8e-40 167.9 171 51.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.7e-39 167.2 254 43.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.2e-39 166.8 253 43.9
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 3.7e-39 166.0 170 53.5
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 6.4e-39 165.2 180 51.1
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.1e-38 162.5 162 53.1
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 5.4e-38 162.2 169 52.7
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.4e-38 162.2 182 50.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 9.2e-38 161.4 258 42.6
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.2e-37 161.0 162 52.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.1e-37 160.2 156 57.1
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 2.7e-37 159.8 150 54.0
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 6.0e-37 158.7 154 52.6
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 8.6e-36 154.8 148 54.1
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.9e-35 153.7 156 55.8
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.9e-35 153.7 156 55.8
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.6e-35 152.1 165 49.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-34 151.0 131 61.1
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.6e-34 150.6 166 48.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.6e-34 150.6 149 51.0
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 2.8e-34 149.8 166 48.8
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 3.6e-34 149.4 166 48.8
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.7e-34 149.1 149 51.7
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 6.8e-33 145.2 169 45.6
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.5e-32 144.1 156 50.0
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 4.4e-32 142.5 175 45.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.4e-32 142.5 155 47.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.4e-32 142.5 155 47.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.4e-32 142.5 155 47.7
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 5.8e-32 142.1 175 45.7
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 7.6e-32 141.7 179 45.8
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.3e-31 141.0 155 47.1
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.8e-31 139.4 250 37.6
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.1e-30 136.0 165 44.8
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 5.4e-30 135.6 161 49.1
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 5.4e-30 135.6 166 43.4
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.2e-29 134.4 184 45.1
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.2e-29 134.4 159 48.4
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.5e-29 132.9 227 37.4
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 4.6e-29 132.5 164 47.0
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.9e-27 127.1 161 40.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.9e-27 127.1 161 40.4
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.9e-27 127.1 161 40.4
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 7.3e-27 125.2 152 44.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.6e-26 122.9 149 45.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.8e-25 120.6 161 38.5
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 4.0e-25 119.4 153 45.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.2e-25 119.0 172 41.9
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.2e-25 119.0 172 41.9
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 8.9e-25 118.2 229 36.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.4e-24 116.3 162 38.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 9.9e-24 114.8 250 34.8
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.8e-23 112.8 151 39.1
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 6.4e-23 112.1 148 39.9
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 6.4e-23 112.1 150 41.3
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.4e-22 110.2 162 38.3
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.4e-22 110.2 162 37.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.2e-21 107.8 147 40.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 6.0e-21 105.5 76 72.4
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.3e-17 92.4 98 50.0
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.3e-15 87.8 75 62.7
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.4e-14 84.3 63 71.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.2e-14 83.2 144 34.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 3.5e-13 79.7 58 65.5
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 9.6e-11 71.6 148 33.1
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.3e-10 71.2 62 62.9
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 7.6e-08 62.0 70 50.0
Thecc.01G313600 Theobroma cacao HOM05D004265 ORTHO05D410241 5.5e-06 55.8 79 38.0


User provided reference genes

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