Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 2.2e-34 148.3 69 100.0
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 1.1e-22 109.4 62 77.4
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.9e-22 108.6 65 75.4
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 3.3e-22 107.8 62 75.8
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 4.3e-22 107.5 64 73.4
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 7.3e-22 106.7 64 73.4
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 7.3e-22 106.7 62 75.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 9.6e-22 106.3 62 75.8
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 9.6e-22 106.3 62 75.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 1.2e-21 105.9 62 75.8
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.6e-21 105.5 62 75.8
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 3.6e-21 104.4 62 72.6
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 3.6e-21 104.4 62 72.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.7e-21 104.0 62 72.6
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 4.7e-21 104.0 62 72.6
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 6.2e-21 103.6 62 74.2
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 6.2e-21 103.6 64 68.8
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 1.1e-20 102.8 64 68.8
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 1.4e-20 102.4 62 72.6
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.4e-20 102.4 62 72.6
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 1.4e-20 102.4 64 68.8
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.4e-20 102.4 62 72.6
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.4e-20 102.4 62 72.6
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.4e-20 102.4 62 71.0
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 1.8e-20 102.1 62 69.4
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 1.8e-20 102.1 62 72.6
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.8e-20 102.1 62 71.0
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 2.4e-20 101.7 64 68.8
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 2.4e-20 101.7 62 72.6
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.4e-20 101.7 62 71.0
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 3.1e-20 101.3 62 71.0
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 3.1e-20 101.3 62 71.0
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 3.1e-20 101.3 62 71.0
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 3.1e-20 101.3 62 69.4
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 3.1e-20 101.3 65 66.2
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 3.1e-20 101.3 63 68.3
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 3.1e-20 101.3 62 71.0
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 4.0e-20 100.9 62 72.6
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 4.0e-20 100.9 62 71.0
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 4.0e-20 100.9 62 69.4
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 4.0e-20 100.9 64 65.6
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 4.0e-20 100.9 64 67.2
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 4.0e-20 100.9 64 70.3
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 4.0e-20 100.9 62 71.0
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 4.0e-20 100.9 62 71.0
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 4.0e-20 100.9 64 67.2
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 72.6
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 72.6
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 5.2e-20 100.5 62 69.4
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 6.9e-20 100.1 62 69.4
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 6.9e-20 100.1 64 67.2
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 6.9e-20 100.1 62 71.0
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 6.9e-20 100.1 62 69.4
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 6.9e-20 100.1 64 65.6
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 8.9e-20 99.8 62 71.0
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 8.9e-20 99.8 62 67.7
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.9e-20 99.8 62 69.4
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 67.7
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 67.7
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 67.7
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 69.4
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 69.4
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.2e-19 99.4 62 69.4
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.2e-19 99.4 64 67.2
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.5e-19 99.0 62 67.7
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 1.5e-19 99.0 62 67.7
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.5e-19 99.0 62 69.4
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.5e-19 99.0 64 65.6
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 1.5e-19 99.0 64 64.1
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.5e-19 99.0 62 71.0
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 1.5e-19 99.0 62 69.4
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-19 98.6 62 67.7
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 2.0e-19 98.6 62 67.7
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 2.0e-19 98.6 62 67.7
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 2.0e-19 98.6 64 65.6
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.0e-19 98.6 62 69.4
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 2.0e-19 98.6 64 65.6
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 2.0e-19 98.6 62 67.7
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 2.6e-19 98.2 62 67.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 2.6e-19 98.2 62 69.4
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 3.4e-19 97.8 62 66.1
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 3.4e-19 97.8 62 66.1
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 3.4e-19 97.8 64 67.2
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 3.4e-19 97.8 64 67.2
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 3.4e-19 97.8 62 69.4
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 3.4e-19 97.8 62 66.1
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 4.4e-19 97.4 62 66.1
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 4.4e-19 97.4 64 67.2
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 5.8e-19 97.1 62 69.4
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 7.6e-19 96.7 62 64.5
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 7.6e-19 96.7 64 67.2
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 7.6e-19 96.7 64 67.2
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 7.6e-19 96.7 62 69.4
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 9.9e-19 96.3 63 65.1
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 1.3e-18 95.9 62 66.1
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 1.3e-18 95.9 62 66.1
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.3e-18 95.9 62 67.7
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.3e-18 95.9 62 66.1
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.3e-18 95.9 62 66.1
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.7e-18 95.5 62 66.1
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.7e-18 95.5 62 67.7
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.2e-18 95.1 64 65.6
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.9e-18 94.7 62 64.5
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 2.9e-18 94.7 63 65.1
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 3.8e-18 94.4 62 66.1
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 6.4e-18 93.6 62 66.1
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.4e-18 93.6 62 64.5
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.4e-17 92.4 55 72.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.9e-17 92.0 62 64.5
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 4.2e-17 90.9 62 66.1
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 4.2e-17 90.9 62 64.5
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 5.4e-17 90.5 76 56.6
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 5.4e-17 90.5 62 62.9
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.6e-16 89.0 62 62.9
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.1e-16 88.6 62 64.5
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.1e-16 88.6 62 59.7
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 2.1e-16 88.6 62 61.3
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.6e-16 87.4 64 59.4
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.0e-15 86.3 64 59.4
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.0e-15 86.3 63 57.1
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.3e-15 85.9 62 59.7
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 1.7e-15 85.5 64 57.8
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 3.0e-15 84.7 64 57.8
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 3.0e-15 84.7 64 57.8
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.0e-15 84.7 64 57.8
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 3.9e-15 84.3 64 57.8
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 5.1e-15 84.0 63 55.6
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 1.1e-14 82.8 48 70.8
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.9e-14 82.0 64 57.8
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 7.3e-14 80.1 98 42.9
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.8e-12 75.5 60 55.0
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 9.0e-12 73.2 62 51.6
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 2.6e-11 71.6 36 80.6
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-10 68.9 36 77.8
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.7e-10 68.9 38 71.1
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.9e-10 67.4 68 48.5
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 2.4e-09 65.1 66 48.5
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.2e-08 62.8 63 50.8
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 2.7e-08 61.6 36 72.2


User provided reference genes

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