Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 0.0e+00 1919.1 1006 100.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.4e-73 282.3 994 30.3
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.5e-70 271.6 984 29.8
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.2e-69 269.2 1065 27.5
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 5.1e-63 247.3 997 28.8
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 8.1e-61 240.0 979 28.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.5e-59 235.7 983 28.7
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.6e-59 235.0 640 32.7
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 3.4e-59 234.6 1051 27.6
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.8e-59 233.8 952 31.5
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 5.8e-59 233.8 1110 27.3
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.6e-56 225.7 1019 28.1
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.6e-53 215.7 979 28.2
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 5.2e-52 210.7 989 27.4
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.9e-52 210.3 988 27.1
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 8.9e-52 209.9 1121 26.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.2e-51 209.5 836 27.9
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.2e-51 209.5 995 27.7
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-51 209.5 1015 27.4
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-51 209.5 1010 27.7
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.5e-51 209.1 980 28.0
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 3.4e-51 208.0 405 39.5
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.3e-50 206.1 963 27.3
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.7e-50 205.7 1160 26.0
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.9e-50 204.9 328 41.8
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.9e-50 204.1 1162 26.5
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 6.4e-50 203.8 866 29.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.4e-49 202.6 954 27.5
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 9.3e-49 199.9 950 26.8
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.0e-47 196.4 914 28.1
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 3.3e-46 191.4 986 27.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.1e-45 188.7 986 25.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.6e-45 188.0 416 36.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 4.8e-45 187.6 997 26.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.8e-45 187.6 488 34.2
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 3.1e-44 184.9 934 25.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 3.1e-44 184.9 714 28.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.3e-44 184.1 263 44.5
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.5e-43 182.6 367 37.1
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 7.6e-43 180.3 1046 25.4
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 6.4e-42 177.2 1029 26.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.9e-41 175.6 707 27.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.9e-41 175.6 320 37.5
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.4e-41 175.3 322 36.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 7.1e-41 173.7 816 26.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-40 172.9 1030 26.3
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.6e-40 172.6 894 25.4
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.6e-40 172.6 762 28.7
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.5e-40 171.4 898 25.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.6e-40 171.0 263 41.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.6e-40 171.0 1056 25.2
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 4.6e-40 171.0 691 26.9
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.0e-40 170.6 268 40.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 3.9e-39 167.9 257 43.2
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 6.7e-39 167.2 718 28.3
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.5e-38 166.0 298 39.3
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.6e-37 162.5 261 40.6
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.6e-37 162.5 516 30.8
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.2e-37 160.6 250 40.0
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 8.1e-37 160.2 257 40.5
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-36 159.8 309 36.2
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-36 159.5 309 36.9
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.4e-36 158.7 1020 24.5
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-36 157.9 250 39.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.3e-36 157.5 891 25.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.6e-35 155.2 326 35.9
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.1e-33 149.8 334 34.1
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.9e-33 149.1 364 34.9
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 3.2e-33 148.3 174 48.3
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.2e-32 146.4 960 25.4
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.6e-32 144.4 249 40.6
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 6.0e-32 144.1 991 24.7
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 2.3e-31 142.1 321 34.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.7e-31 140.6 974 23.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.5e-30 139.4 507 28.8
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.9e-30 139.0 252 38.9
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.3e-30 137.9 1038 25.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 9.6e-30 136.7 247 36.0
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 4.8e-29 134.4 250 38.4
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 8.2e-29 133.7 982 25.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.9e-28 130.6 259 38.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.0e-27 129.0 713 25.4
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.5e-27 127.9 699 25.5
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 5.8e-27 127.5 248 37.5
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.6e-27 127.1 505 29.7
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.0e-26 126.7 984 24.0
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.9e-26 125.2 252 37.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 8.4e-26 123.6 874 24.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.1e-25 123.2 246 37.0
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.2e-25 121.3 219 39.3
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 3.5e-24 118.2 219 38.8
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 3.5e-24 118.2 309 34.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.5e-22 112.8 249 34.1
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.4e-20 105.5 948 25.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.0e-19 102.4 198 35.9
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.9e-18 98.6 132 43.2
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.5e-17 95.5 319 30.1
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.5e-17 94.4 715 24.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 5.5e-17 94.4 248 33.5
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.2e-16 93.2 254 33.1
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.1e-16 90.9 364 28.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.1e-14 86.7 123 41.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.1e-14 86.7 136 39.7
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.5e-14 85.5 136 37.5
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 7.4e-14 84.0 138 40.6
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.1e-12 80.1 324 28.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.1e-12 80.1 132 36.4
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.1e-12 80.1 466 25.1
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 6.9e-12 77.4 991 23.7
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 9.1e-12 77.0 123 39.0
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 7.7e-11 73.9 783 22.9
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.7e-10 72.8 142 35.9
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.0e-10 71.2 117 39.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.0e-10 71.2 117 39.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 6.5e-10 70.9 121 38.8
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.9e-09 69.3 438 24.2
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 4.2e-09 68.2 117 37.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 4.2e-09 68.2 117 37.6
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 7.2e-09 67.4 121 35.5
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 7.2e-09 67.4 443 22.8
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-08 66.6 444 23.0
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.1e-08 65.9 133 34.6
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.7e-08 65.5 559 24.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 7.9e-08 63.9 399 23.1
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.0e-07 63.5 399 23.1
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.0e-07 63.5 150 32.7
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 3.3e-06 58.5 245 27.3
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 4.4e-06 58.2 559 23.1


User provided reference genes

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