Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.4e-44 181.4 100 100.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.6e-25 119.4 101 70.3
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.8e-21 105.9 107 63.6
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 5.3e-21 104.4 100 53.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 5.8e-20 100.9 97 59.8
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.8e-20 100.9 103 55.3
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 5.8e-20 100.9 98 54.1
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 6.4e-19 97.4 98 52.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 6.4e-19 97.4 100 50.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.1e-18 96.7 97 53.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.4e-18 96.3 89 62.9
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.9e-18 95.9 95 51.6
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.4e-18 95.5 100 53.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 2.4e-18 95.5 99 52.5
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.2e-18 95.1 100 50.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.2e-18 95.1 99 57.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.2e-18 95.1 100 54.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 9.3e-18 93.6 101 55.4
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 2.1e-17 92.4 101 56.4
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.1e-17 92.4 101 54.5
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.7e-17 92.0 101 50.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 6.0e-17 90.9 94 46.8
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 6.0e-17 90.9 100 53.0
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.9e-17 90.5 94 53.2
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.3e-16 89.7 104 48.1
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-16 89.7 100 51.0
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.8e-16 89.4 99 51.5
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 3.0e-16 88.6 101 50.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 6.7e-16 87.4 102 50.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 8.7e-16 87.0 92 50.0
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 8.7e-16 87.0 101 50.5
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 8.7e-16 87.0 107 47.7
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.1e-15 86.7 102 50.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.1e-15 86.7 102 50.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-15 86.3 92 55.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.5e-15 86.3 101 49.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.9e-15 85.9 101 49.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-15 85.9 101 50.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 2.5e-15 85.5 55 72.7
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.5e-15 85.5 57 71.9
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 3.3e-15 85.1 91 51.6
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.3e-15 85.1 101 49.5
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 3.3e-15 85.1 102 49.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.6e-15 84.3 103 53.4
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.6e-15 84.3 100 48.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.6e-15 84.3 107 48.6
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.4e-15 84.0 101 48.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.6e-15 83.6 101 48.5
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 9.6e-15 83.6 101 45.5
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.3e-14 83.2 101 48.5
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.3e-14 83.2 95 52.6
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.6e-14 82.8 97 49.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.6e-14 82.8 97 47.4
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.1e-14 82.4 101 48.5
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.1e-14 82.4 92 53.3
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.1e-14 82.4 96 47.9
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 6.2e-14 80.9 103 45.6
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 8.1e-14 80.5 102 46.1
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.1e-13 80.1 104 45.2
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.1e-13 80.1 100 48.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.4e-13 79.7 101 47.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.4e-13 79.0 102 46.1
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.0e-13 78.2 98 49.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 4.0e-13 78.2 102 45.1
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 4.0e-13 78.2 104 46.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 5.3e-13 77.8 93 48.4
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-12 76.6 57 61.4
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.0e-12 75.9 98 48.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.0e-12 75.9 98 48.0
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 2.6e-12 75.5 95 46.3
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.6e-12 75.5 101 49.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.6e-12 75.5 101 47.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 3.4e-12 75.1 101 46.5
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.4e-12 75.1 53 67.9
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.5e-12 74.7 99 48.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 7.6e-12 73.9 98 44.9
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.0e-11 73.6 96 44.8
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.0e-11 73.6 97 47.4
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.3e-11 73.2 101 42.6
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.3e-11 73.2 102 45.1
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.7e-11 72.8 101 43.6
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 2.2e-11 72.4 87 48.3
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 2.2e-11 72.4 99 36.4
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 3.8e-11 71.6 99 37.4
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 3.8e-11 71.6 99 37.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 4.9e-11 71.2 102 43.1
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.5e-11 70.9 99 46.5
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.4e-11 70.5 99 46.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 8.4e-11 70.5 92 46.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 8.4e-11 70.5 71 57.7
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.9e-10 69.3 98 35.7
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.9e-10 69.3 98 35.7
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.9e-10 69.3 87 52.9
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.5e-10 68.9 98 39.8
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 2.5e-10 68.9 82 50.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.5e-10 68.9 54 63.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 3.2e-10 68.6 54 61.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 4.2e-10 68.2 71 52.1
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 5.5e-10 67.8 99 34.3
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 5.5e-10 67.8 100 43.0
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 7.1e-10 67.4 100 45.0
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 9.3e-10 67.0 76 40.8
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 9.3e-10 67.0 98 35.7
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 9.3e-10 67.0 98 35.7
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 9.3e-10 67.0 98 35.7
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.2e-09 66.6 98 37.8
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-09 66.6 99 34.3
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.2e-09 66.6 99 34.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.6e-09 66.2 57 50.9
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.6e-09 66.2 50 58.0
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.7e-09 65.5 100 34.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.7e-09 65.5 100 34.0
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.7e-09 65.5 100 34.0
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 3.5e-09 65.1 60 60.0
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 6.0e-09 64.3 100 44.0
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.8e-08 62.8 53 56.6
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.3e-08 62.4 90 35.6
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 3.0e-08 62.0 57 52.6
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 3.0e-08 62.0 100 33.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.9e-08 61.6 90 41.1
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 5.1e-08 61.2 50 60.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 5.1e-08 61.2 103 39.8
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.1e-08 61.2 95 38.9
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 8.7e-08 60.5 50 54.0
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 8.7e-08 60.5 50 54.0
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 8.7e-08 60.5 50 54.0
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 8.7e-08 60.5 50 54.0
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 8.7e-08 60.5 50 54.0
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 1.5e-07 59.7 58 58.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 4.3e-07 58.2 68 39.7
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.6e-07 57.0 49 49.0
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 9.6e-07 57.0 103 36.9
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 2.8e-06 55.5 99 35.4
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 3.7e-06 55.1 98 36.7
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.8e-06 54.7 57 50.9
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 4.8e-06 54.7 96 35.4
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 8.2e-06 53.9 103 36.9


User provided reference genes

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