Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-75 286.6 144 100.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.9e-17 92.0 111 49.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 6.6e-17 91.3 108 47.2
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.5e-16 90.1 101 52.5
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.5e-16 90.1 95 50.5
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.5e-16 89.4 92 51.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.6e-16 88.2 111 47.7
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 9.6e-16 87.4 105 50.5
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 3.6e-15 85.5 86 48.8
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-14 84.0 80 52.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.1e-14 84.0 97 49.5
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.8e-14 83.2 80 55.0
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 6.9e-14 81.3 77 54.5
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 6.9e-14 81.3 107 47.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 9.0e-14 80.9 99 48.5
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-13 80.5 79 54.4
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.2e-13 80.5 106 44.3
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.5e-13 80.1 105 46.7
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.6e-13 77.8 108 46.3
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.6e-13 77.8 84 51.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 9.9e-13 77.4 84 51.2
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-12 77.0 77 54.5
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.7e-12 76.6 79 50.6
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.2e-12 76.3 111 43.2
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.8e-12 75.5 108 49.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.8e-12 75.5 82 50.0
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 4.9e-12 75.1 109 45.9
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 6.4e-12 74.7 75 53.3
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.1e-11 73.9 101 49.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.1e-11 73.9 78 50.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.9e-11 73.2 79 50.6
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.9e-11 73.2 96 47.9
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.9e-11 73.2 112 42.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-11 72.8 81 53.1
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-11 72.8 107 42.1
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-11 72.4 78 50.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-11 72.4 81 53.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-11 72.4 97 46.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.2e-11 72.4 107 43.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.2e-11 72.4 112 42.9
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.2e-11 72.0 81 53.1
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.2e-11 72.0 111 41.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 5.4e-11 71.6 105 42.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.1e-11 71.2 101 45.5
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 7.1e-11 71.2 83 51.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 9.3e-11 70.9 80 51.2
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.7e-10 69.3 78 51.3
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.7e-10 69.3 80 51.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.7e-10 69.3 74 50.0
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.7e-10 69.3 110 41.8
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.5e-10 68.9 78 51.3
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.5e-10 68.9 80 46.2
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-10 68.9 111 40.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-10 68.9 111 40.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.5e-10 68.9 87 46.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.6e-10 68.6 103 41.7
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 4.6e-10 68.6 80 48.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 4.6e-10 68.6 85 47.1
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.6e-10 68.6 80 48.8
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.9e-10 67.8 88 46.6
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.0e-09 67.4 112 40.2
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.8e-09 66.6 84 45.2
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.9e-09 65.5 99 44.4
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.1e-09 65.1 75 45.3
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 5.1e-09 65.1 96 41.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 5.1e-09 65.1 75 46.7
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 5.1e-09 65.1 106 42.5
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 6.7e-09 64.7 116 36.2
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.7e-09 64.7 82 42.7
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 6.7e-09 64.7 105 39.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 6.7e-09 64.7 98 38.8
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 8.7e-09 64.3 71 49.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.7e-09 64.3 80 38.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 8.7e-09 64.3 65 55.4
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.7e-09 64.3 111 39.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.1e-08 63.9 105 41.9
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-08 63.5 111 39.6
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.5e-08 63.5 75 48.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.9e-08 63.2 109 40.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-08 63.2 79 46.8
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.5e-08 62.8 73 53.4
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.3e-08 62.4 101 40.6
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.3e-08 62.4 89 40.4
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.3e-08 62.0 103 37.9
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 7.4e-08 61.2 102 40.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 7.4e-08 61.2 104 40.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.6e-08 60.8 78 43.6
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 9.6e-08 60.8 102 40.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 9.6e-08 60.8 76 50.0
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 9.6e-08 60.8 82 45.1
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.6e-07 60.1 81 37.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.6e-07 60.1 69 49.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-07 60.1 111 37.8
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.1e-07 59.7 71 43.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.1e-07 59.7 71 43.7
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.1e-07 59.7 71 43.7
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.1e-07 59.7 83 43.4
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.7e-07 58.9 83 38.6
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.7e-07 58.9 76 43.4
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.8e-07 58.5 75 44.0
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 4.8e-07 58.5 68 45.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 4.8e-07 58.5 108 37.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.8e-07 58.5 82 42.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 6.2e-07 58.2 78 41.0
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 6.2e-07 58.2 96 35.4
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 6.2e-07 58.2 78 43.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 6.2e-07 58.2 78 43.6
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 8.1e-07 57.8 90 38.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.1e-06 57.4 110 34.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.8e-06 56.6 73 43.8
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.4e-06 56.2 109 37.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-06 56.2 97 38.1
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 3.1e-06 55.8 82 40.2
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.1e-06 55.8 82 40.2
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.1e-06 55.8 87 42.5
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 3.1e-06 55.8 77 42.9
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.1e-06 55.8 75 45.3
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 4.0e-06 55.5 110 38.2
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.3e-06 55.1 93 39.8
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.9e-06 54.7 96 37.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 9.0e-06 54.3 83 34.9
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 9.0e-06 54.3 61 42.6


User provided reference genes

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