Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005128 Daucus carota HOM05D001824 ORTHO05D177645 8.6e-99 363.6 178 100.0
Rhsim06G0097900 Rhododendron simsii HOM05D001824 ORTHO05D003650 2.1e-12 76.6 88 42.0
DCAR_010072 Daucus carota HOM05D001824 ORTHO05D003650 2.8e-09 66.2 89 43.8
Sc01g0001690 Simmondsia chinensis HOM05D001824 ORTHO05D003650 2.8e-09 66.2 90 41.1
arahy.Tifrunner.gnm1.ann1.9S5M62 Arachis hypogaea HOM05D001824 ORTHO05D003650 1.1e-08 64.3 85 42.4
arahy.Tifrunner.gnm1.ann1.Y5PHEB Arachis hypogaea HOM05D001824 ORTHO05D003650 1.1e-08 64.3 85 42.4
Medtr1g096050 Medicago truncatula HOM05D001824 ORTHO05D003650 1.1e-08 64.3 150 30.7
COL.COLO4_35563 Corchorus olitorius HOM05D001824 ORTHO05D003650 1.4e-08 63.9 89 39.3
Manes.02G190500 Manihot esculenta HOM05D001824 ORTHO05D003650 1.4e-08 63.9 154 35.1
vmacro12500 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 1.4e-08 63.9 89 40.4
Aqoxy5G02576 Aquilegia oxysepala HOM05D001824 ORTHO05D003650 1.8e-08 63.5 89 39.3
Glyma.10G214900 Glycine max HOM05D001824 ORTHO05D003650 1.8e-08 63.5 130 36.2
Glyma.20G176900 Glycine max HOM05D001824 ORTHO05D003650 1.8e-08 63.5 130 36.2
TAR381G1280 Trochodendron aralioides HOM05D001824 ORTHO05D003650 1.8e-08 63.5 89 40.4
VMungo0720G0126 Vigna mungo HOM05D001824 ORTHO05D003650 1.8e-08 63.5 130 36.2
Duzib116G0086 Durio zibethinus HOM05D001824 ORTHO05D003650 2.4e-08 63.2 105 39.0
Phvul.007G090800 Phaseolus vulgaris HOM05D001824 ORTHO05D003650 2.4e-08 63.2 85 41.2
Atru.chr13.1842 Acer truncatum HOM05D001824 ORTHO05D003650 3.1e-08 62.8 86 41.9
Cpa.g.sc66.67 Carica papaya HOM05D001824 ORTHO05D003650 3.1e-08 62.8 89 40.4
CiPaw.15G082900 Carya illinoinensis HOM05D001824 ORTHO05D003650 3.1e-08 62.8 89 38.2
SalBow7G1597 Salvia bowleyana HOM05D001824 ORTHO05D003650 3.1e-08 62.8 81 43.2
Ciclev10001139m.g Citrus clementina HOM05D001824 ORTHO05D003650 4.1e-08 62.4 89 39.3
Hma1.2p1_0004F.1_g004090 Hydrangea macrophylla HOM05D001824 ORTHO05D003650 4.1e-08 62.4 89 38.2
MD05G1040100 Malus domestica HOM05D001824 ORTHO05D003650 4.1e-08 62.4 89 39.3
Ca_10600_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 5.3e-08 62.0 153 30.7
MBI16_g07679_MAGBIO Magnolia biondii HOM05D001824 ORTHO05D003650 5.3e-08 62.0 89 38.2
Manes.18G099500 Manihot esculenta HOM05D001824 ORTHO05D003650 5.3e-08 62.0 154 33.1
Os05g0432600 Oryza sativa ssp. japonica HOM05D001824 ORTHO05D003650 5.3e-08 62.0 88 39.8
Potri.013G115000 Populus trichocarpa HOM05D001824 ORTHO05D003650 5.3e-08 62.0 45 64.4
Prupe.8G053500 Prunus persica HOM05D001824 ORTHO05D003650 5.3e-08 62.0 89 40.4
PGR042G3057 Punica granatum HOM05D001824 ORTHO05D003650 5.3e-08 62.0 89 39.3
TPR.G1781 Trifolium pratense HOM05D001824 ORTHO05D003650 5.3e-08 62.0 85 38.8
ATR0584G075 Amborella trichopoda HOM05D001824 ORTHO05D003650 7.0e-08 61.6 88 40.9
Eucgr.F02631 Eucalyptus grandis HOM05D001824 ORTHO05D003650 7.0e-08 61.6 88 40.9
QL02p034137 Quercus lobata HOM05D001824 ORTHO05D003650 7.0e-08 61.6 89 39.3
Sabra13G0097300 Salix brachista HOM05D001824 ORTHO05D003650 7.0e-08 61.6 45 64.4
SGA_v2.0_scaffold118G32460 Striga asiatica HOM05D001824 ORTHO05D003650 7.0e-08 61.6 89 39.3
Thecc.08G201600 Theobroma cacao HOM05D001824 ORTHO05D003650 7.0e-08 61.6 51 54.9
Zm00001eb146430 Zea mays HOM05D001824 ORTHO05D003650 7.0e-08 61.6 89 38.2
Cfa018206 Carpinus fangiana HOM05D001824 ORTHO05D003650 9.1e-08 61.2 87 39.1
CDE02G0718 Ceratophyllum demersum HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 42.4
FvH4_2g12290 Fragaria vesca HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 43.5
FAN24G1226 Fragaria x ananassa HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 43.5
FAN27G0784 Fragaria x ananassa HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 43.5
Psat6g186520 Pisum sativum HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 40.0
TWI60G0971 Tripterygium wilfordii HOM05D001824 ORTHO05D003650 9.1e-08 61.2 85 42.4
Actinidia23327 Actinidia chinensis HOM05D001824 ORTHO05D003650 1.2e-07 60.8 88 38.6
Lalb_Chr21g0305841 Lupinus albus HOM05D001824 ORTHO05D003650 1.2e-07 60.8 85 42.4
MD10G1046100 Malus domestica HOM05D001824 ORTHO05D003650 1.2e-07 60.8 89 39.3
Peaxi162Scf00076g00117 Petunia axillaris HOM05D001824 ORTHO05D003650 1.2e-07 60.8 85 42.4
Hund27076 Selenicereus undatus HOM05D001824 ORTHO05D003650 1.2e-07 60.8 86 40.7
TPR.G1771 Trifolium pratense HOM05D001824 ORTHO05D003650 1.2e-07 60.8 85 40.0
GSVIVG01034879001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.2e-07 60.8 89 38.2
MSTRG.1506 Avicennia marina HOM05D001824 ORTHO05D003650 1.6e-07 60.5 105 37.1
MSTRG.27857 Avicennia marina HOM05D001824 ORTHO05D003650 1.6e-07 60.5 90 37.8
EL10Ac1g00065 Beta vulgaris HOM05D001824 ORTHO05D003650 1.6e-07 60.5 86 41.9
Cc02_g23040 Coffea canephora HOM05D001824 ORTHO05D003650 1.6e-07 60.5 94 39.4
FAN20G0002 Fragaria x ananassa HOM05D001824 ORTHO05D003650 1.6e-07 60.5 89 39.3
Os01g0871100 Oryza sativa ssp. japonica HOM05D001824 ORTHO05D003650 1.6e-07 60.5 89 37.1
Lalb_Chr02g0141871 Lupinus albus HOM05D001824 ORTHO05D003650 2.0e-07 60.1 85 41.2
PGR042G1800 Punica granatum HOM05D001824 ORTHO05D003650 2.0e-07 60.1 89 39.3
RcHm_v2.0_Chr6g0272221 Rosa chinensis HOM05D001824 ORTHO05D003650 2.0e-07 60.1 85 42.4
CSS0006144 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 2.6e-07 59.7 89 38.2
Ciclev10001852m.g Citrus clementina HOM05D001824 ORTHO05D003650 2.6e-07 59.7 86 40.7
Nn5g27813 Nelumbo nucifera HOM05D001824 ORTHO05D003650 2.6e-07 59.7 89 40.4
Psat2g181440 Pisum sativum HOM05D001824 ORTHO05D003650 2.6e-07 59.7 43 62.8
CANSAT35G1733 Cannabis sativa HOM05D001824 ORTHO05D003650 3.5e-07 59.3 45 57.8
Dinv41685 Davidia involucrata HOM05D001824 ORTHO05D003650 3.5e-07 59.3 89 37.1
Lsat_1_v5_gn_1_13101 Lactuca sativa HOM05D001824 ORTHO05D003650 3.5e-07 59.3 45 60.0
SalBow3G0786 Salvia bowleyana HOM05D001824 ORTHO05D003650 3.5e-07 59.3 95 37.9
Zm00001eb289220 Zea mays HOM05D001824 ORTHO05D003650 3.5e-07 59.3 87 39.1
SHI09051 Sapria himalayana HOM05D001824 ORTHO05D003650 4.5e-07 58.9 90 37.8
Aa31LG6G8410 Aethionema arabicum HOM05D001824 ORTHO05D003650 5.9e-07 58.5 89 39.3
AUR62023581 Chenopodium quinoa HOM05D001824 ORTHO05D003650 5.9e-07 58.5 86 41.9
Glyma.20G177000 Glycine max HOM05D001824 ORTHO05D003650 5.9e-07 58.5 45 55.6
unitig_747.g21267 Utricularia gibba HOM05D001824 ORTHO05D003650 5.9e-07 58.5 155 32.9
HPP92_025040 Vanilla planifolia HOM05D001824 ORTHO05D003650 5.9e-07 58.5 45 60.0
Migut.C01233 Erythranthe guttata HOM05D001824 ORTHO05D003650 7.7e-07 58.2 89 36.0
HanXRQChr02g0041851 Helianthus annuus HOM05D001824 ORTHO05D003650 7.7e-07 58.2 45 60.0
Lj5g0019829 Lotus japonicus HOM05D001824 ORTHO05D003650 7.7e-07 58.2 86 39.5
Medtr1g096200 Medicago truncatula HOM05D001824 ORTHO05D003650 7.7e-07 58.2 85 40.0
Ah.05g177800 Amaranthus hybridus HOM05D001824 ORTHO05D003650 1.0e-06 57.8 86 39.5
ClCG11G013300 Citrullus lanatus HOM05D001824 ORTHO05D003650 1.0e-06 57.8 91 38.5
Haze_17902 Corylus avellana HOM05D001824 ORTHO05D003650 1.0e-06 57.8 42 61.9
Migut.B00783 Erythranthe guttata HOM05D001824 ORTHO05D003650 1.0e-06 57.8 90 38.9
Gohir.D01G174100 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.0e-06 57.8 83 38.6
Gorai.002G216200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.0e-06 57.8 83 38.6
Gorai.005G075200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.0e-06 57.8 105 38.1
SEGI_29742 Sequoiadendron giganteum HOM05D001824 ORTHO05D003650 1.0e-06 57.8 43 62.8
GSVIVG01023264001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.0e-06 57.8 45 57.8
Ca_10601_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 1.3e-06 57.4 85 38.8
ECA247G2632 Erigeron canadensis HOM05D001824 ORTHO05D003650 1.3e-06 57.4 45 57.8
Thhalv10007321m.g Eutrema salsugineum HOM05D001824 ORTHO05D003650 1.3e-06 57.4 110 36.4
Lj5C262T14 Lonicera japonica HOM05D001824 ORTHO05D003650 1.3e-06 57.4 45 57.8
Phvul.007G091100 Phaseolus vulgaris HOM05D001824 ORTHO05D003650 1.3e-06 57.4 45 53.3
THA.LOC104816259 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 1.3e-06 57.4 89 39.3
PGR102G0680 Punica granatum HOM05D001824 ORTHO05D003650 1.7e-06 57.0 43 62.8
DCAR_006680 Daucus carota HOM05D001824 ORTHO05D003650 2.2e-06 56.6 94 37.2
Gohir.A02G060800 Gossypium hirsutum HOM05D001824 ORTHO05D003650 2.2e-06 56.6 105 38.1
Oeu000556.1 Olea europaea HOM05D001824 ORTHO05D003650 2.2e-06 56.6 89 38.2
Gohir.A01G183000 Gossypium hirsutum HOM05D001824 ORTHO05D003650 2.9e-06 56.2 156 30.8
SGA_v2.0_scaffold8G04436 Striga asiatica HOM05D001824 ORTHO05D003650 2.9e-06 56.2 46 56.5
CsaV3_5G029820 Cucumis sativus L. HOM05D001824 ORTHO05D003650 3.8e-06 55.8 91 37.4
DCAR_018596 Daucus carota HOM05D001339 ORTHO05D002998 3.8e-06 55.8 89 42.7
Duzib248G0420 Durio zibethinus HOM05D001824 ORTHO05D003650 3.8e-06 55.8 91 37.4
Gohir.D02G066300 Gossypium hirsutum HOM05D001824 ORTHO05D003650 3.8e-06 55.8 89 38.2
HanXRQChr16g0509431 Helianthus annuus HOM05D001824 ORTHO05D003650 3.8e-06 55.8 90 34.4
Lsat_1_v5_gn_9_119461 Lactuca sativa HOM05D001824 ORTHO05D003650 3.8e-06 55.8 89 34.8
THA.LOC104816249 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 3.8e-06 55.8 89 37.1
AL1G48890 Arabidopsis lyrata HOM05D001824 ORTHO05D003650 5.0e-06 55.5 110 37.3
AT1G34340 Arabidopsis thaliana HOM05D001824 ORTHO05D003650 5.0e-06 55.5 110 37.3
CARHR033790 Cardamine hirsuta HOM05D001824 ORTHO05D003650 5.0e-06 55.5 89 36.0
MELO3C011823.2 Cucumis melo HOM05D001824 ORTHO05D003650 5.0e-06 55.5 91 37.4
FvH4_4g02600 Fragaria vesca HOM05D001824 ORTHO05D003650 5.0e-06 55.5 45 60.0
FAN12G3447 Fragaria x ananassa HOM05D001824 ORTHO05D003650 5.0e-06 55.5 45 60.0
HanXRQChr01g0027181 Helianthus annuus HOM05D001824 ORTHO05D003650 5.0e-06 55.5 45 53.3
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 5.0e-06 55.5 45 55.6
Lsat_1_v5_gn_9_120361 Lactuca sativa HOM05D001824 ORTHO05D003650 5.0e-06 55.5 45 55.6
Oeu064614.1 Olea europaea HOM05D001824 ORTHO05D003650 5.0e-06 55.5 46 54.3
PSO017G6536 Papaver somniferum HOM05D001824 ORTHO05D003650 5.0e-06 55.5 89 37.1
PSO170G0387 Papaver somniferum HOM05D001824 ORTHO05D003650 5.0e-06 55.5 89 37.1
Solyc01g103650.3 Solanum lycopersicum HOM05D001824 ORTHO05D003650 5.0e-06 55.5 82 37.8
Sopen01g046060 Solanum pennellii HOM05D001824 ORTHO05D003650 5.0e-06 55.5 82 37.8
Thecc.02G019900 Theobroma cacao HOM05D001824 ORTHO05D003650 5.0e-06 55.5 45 57.8
Carub.0001s3247 Capsella rubella HOM05D001824 ORTHO05D003650 6.5e-06 55.1 110 35.5
CARHR258760 Cardamine hirsuta HOM05D001824 ORTHO05D003650 6.5e-06 55.1 45 57.8
COL.COLO4_17736 Corchorus olitorius HOM05D001824 ORTHO05D003650 6.5e-06 55.1 46 56.5
Aa31LG3G6730 Aethionema arabicum HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
BcaC04g20841 Brassica carinata HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
A10p08620 Brassica napus HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
C09p38570 Brassica napus HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
BolC9t56714H Brassica oleracea HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
BraSC37t46144Z Brassica rapa HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8
Sp1g29550 Schrenkiella parvula HOM05D001824 ORTHO05D003650 8.5e-06 54.7 89 36.0
vmacro01722 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 8.5e-06 54.7 45 57.8


User provided reference genes

Program Settings