Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 0.0e+00 1209.9 615 100.0
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.0e-135 488.0 274 85.4
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.8e-135 487.3 252 92.9
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.7e-135 485.3 253 91.7
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.2e-134 484.6 259 91.5
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.5e-134 484.2 254 92.1
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 4.4e-134 482.6 254 91.7
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 4.4e-134 482.6 257 89.5
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 5.7e-134 482.3 274 86.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 7.5e-134 481.9 258 89.1
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 7.5e-134 481.9 250 92.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.8e-133 479.9 258 88.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.7e-133 479.6 251 91.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.7e-133 479.6 250 92.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.7e-133 479.6 253 91.3
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 4.8e-133 479.2 257 91.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 4.8e-133 479.2 253 90.1
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.3e-133 478.8 254 90.9
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 6.3e-133 478.8 249 93.2
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 6.3e-133 478.8 252 91.7
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 6.3e-133 478.8 252 92.1
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.1e-132 478.0 258 89.5
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.1e-132 478.0 260 88.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.4e-132 477.6 259 88.4
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.8e-132 477.2 254 90.6
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.8e-132 477.2 260 88.8
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.8e-132 477.2 252 92.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.4e-132 476.9 252 90.5
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.1e-132 476.5 257 89.9
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 3.1e-132 476.5 255 89.0
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 3.1e-132 476.5 255 89.4
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.1e-132 476.5 249 91.2
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.1e-132 476.1 253 89.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.1e-132 476.1 254 90.2
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 4.1e-132 476.1 258 89.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 4.1e-132 476.1 255 88.6
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 5.3e-132 475.7 254 89.8
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 5.3e-132 475.7 254 89.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 5.3e-132 475.7 249 91.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 7.0e-132 475.3 257 88.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.0e-132 475.3 252 90.5
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 9.1e-132 474.9 249 91.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.6e-131 474.2 251 90.8
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.0e-131 473.8 252 90.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.0e-131 473.8 251 91.2
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.7e-131 473.4 254 89.4
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 3.5e-131 473.0 257 89.9
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 4.5e-131 472.6 255 89.0
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.5e-131 472.6 251 90.0
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.5e-131 472.6 252 90.9
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-131 472.6 252 90.9
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-131 472.6 252 90.9
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 4.5e-131 472.6 251 90.8
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 4.5e-131 472.6 261 88.9
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 5.9e-131 472.2 274 83.6
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 5.9e-131 472.2 255 89.0
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 7.7e-131 471.9 249 91.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.3e-130 471.1 251 89.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.3e-130 471.1 249 89.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.7e-130 470.7 249 90.0
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.7e-130 470.7 255 89.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.2e-130 470.3 253 89.7
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 2.2e-130 470.3 249 91.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-130 470.3 252 90.5
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.2e-130 470.3 255 90.6
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.9e-130 469.9 253 89.7
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.9e-130 469.9 251 90.0
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 3.8e-130 469.5 251 89.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.8e-130 469.5 251 89.6
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.8e-130 469.5 251 89.6
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 5.0e-130 469.2 247 90.3
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 8.5e-130 468.4 255 88.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.1e-129 468.0 253 88.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.1e-129 468.0 245 91.8
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.1e-129 468.0 250 91.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-129 468.0 247 91.1
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-129 467.2 247 90.7
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 5.5e-129 465.7 255 87.8
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 7.2e-129 465.3 246 90.2
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.2e-128 464.5 251 88.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.2e-128 464.5 248 88.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 2.1e-128 463.8 249 89.2
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.6e-128 463.0 252 87.7
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 6.1e-128 462.2 249 86.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 8.0e-128 461.8 273 84.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.0e-127 459.5 249 88.8
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 2.8e-125 453.4 253 87.0
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.2e-123 448.0 249 85.9
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.0e-123 447.2 247 87.4
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 5.5e-121 439.1 253 83.0
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.8e-120 436.8 269 80.7
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.5e-118 431.0 256 82.0
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.4e-118 429.9 359 64.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 8.3e-117 425.2 253 79.8
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 7.0e-116 422.2 232 89.2
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 9.2e-116 421.8 250 82.8
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.6e-115 421.0 247 81.0
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.7e-115 420.2 228 89.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.2e-112 411.4 243 81.1
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 7.0e-108 395.6 249 75.1
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 5.6e-105 386.0 222 85.6
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.0e-98 365.2 191 94.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.8e-95 352.4 190 91.1
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.9e-92 344.4 244 68.4
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 7.3e-89 332.4 171 94.7
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 8.1e-88 328.9 171 92.4
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 4.0e-87 326.6 181 89.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.9e-85 320.5 168 92.3
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 3.9e-82 310.1 182 85.7
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.3e-81 307.0 165 89.1
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.4e-77 292.4 185 76.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-74 285.0 164 87.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-73 281.6 164 84.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.3e-73 280.0 164 86.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.1e-71 275.4 145 93.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.2e-70 271.9 147 91.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 3.4e-70 270.4 155 87.7
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.9e-69 267.3 155 87.1
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.1e-68 262.7 213 67.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-67 261.5 156 83.3
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-66 258.5 174 75.3
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.1e-66 256.5 146 83.6
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.6e-62 244.2 158 78.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.0e-53 215.7 141 77.3
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.5e-52 211.1 191 55.5
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.7e-51 207.6 151 72.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 9.7e-41 172.6 167 58.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.0e-38 164.9 93 86.0
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.8e-31 141.7 76 92.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 2.1e-27 128.3 129 56.6
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 5.2e-26 123.6 83 68.7
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 5.7e-25 120.2 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.4e-23 115.5 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.6e-17 94.7 55 76.4
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 7.5e-17 93.2 55 74.5
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 1.7e-16 92.0 46 89.1
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 5.3e-15 87.0 50 76.0
DCAR_031829 Daucus carota HOM05D024847 ORTHO05D000385 8.0e-11 73.2 256 34.0
DCAR_005096 Daucus carota HOM05D022224 ORTHO05D000385 1.8e-07 62.0 295 29.8
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 1.2e-06 59.3 283 28.6
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 1.6e-06 58.9 84 41.7


User provided reference genes

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