Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 5.5e-164 580.9 285 100.0
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 2.7e-147 525.4 346 78.9
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.1e-135 485.3 325 77.5
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.7e-102 375.9 194 95.4
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 4.7e-91 338.6 332 53.6
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 3.3e-84 315.8 154 98.1
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.4e-79 299.7 334 48.8
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 5.4e-79 298.5 339 46.6
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.3e-77 293.9 332 46.1
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.3e-77 293.1 332 46.1
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 6.6e-77 291.6 263 55.1
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.6e-75 287.0 339 45.1
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.6e-75 285.8 337 44.2
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 3.1e-74 282.7 332 44.6
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.1e-74 282.7 338 45.3
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 6.9e-74 281.6 342 43.0
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 9.0e-74 281.2 332 44.9
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 2.0e-73 280.0 333 43.5
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.0e-73 280.0 334 44.6
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.3e-72 277.3 332 44.3
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 2.2e-72 276.6 325 45.5
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.9e-72 276.2 356 42.1
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.8e-72 275.8 376 40.2
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.4e-71 273.9 321 44.2
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.9e-71 273.5 341 43.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 4.2e-71 272.3 356 43.5
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 4.2e-71 272.3 334 43.7
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.1e-70 270.0 329 44.4
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 3.5e-70 269.2 180 69.4
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-70 269.2 328 44.2
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 4.6e-70 268.9 326 44.2
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.8e-70 268.1 328 43.9
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.0e-69 267.7 328 43.6
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-69 267.7 328 43.9
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.0e-69 267.7 333 42.6
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.3e-69 267.3 334 42.5
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.3e-69 267.3 334 42.2
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.7e-69 266.9 324 44.1
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.3e-69 266.5 328 43.3
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.3e-69 266.5 334 43.7
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 6.6e-69 265.0 334 41.6
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 6.6e-69 265.0 334 43.4
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 8.7e-69 264.6 333 41.7
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 8.7e-69 264.6 334 43.4
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 1.1e-68 264.2 343 42.3
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.1e-68 264.2 306 46.7
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.5e-68 263.8 332 44.0
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 2.5e-68 263.1 332 42.8
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.3e-68 262.3 206 60.2
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 4.3e-68 262.3 334 44.3
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 4.3e-68 262.3 344 44.2
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.6e-68 261.9 328 43.9
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 7.3e-68 261.5 335 43.0
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 9.6e-68 261.2 332 43.1
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-67 260.8 328 43.3
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 1.3e-67 260.8 340 43.5
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-67 260.4 334 41.9
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.6e-67 260.4 334 43.4
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 2.8e-67 259.6 335 42.7
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 3.6e-67 259.2 326 42.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 4.8e-67 258.8 338 42.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 6.2e-67 258.5 332 42.8
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 8.1e-67 258.1 344 43.6
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 8.1e-67 258.1 340 42.1
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.8e-66 256.9 329 43.5
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.9e-66 255.0 180 62.8
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 6.9e-66 255.0 333 42.9
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.0e-65 253.4 180 63.9
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 3.4e-65 252.7 333 42.6
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 4.5e-65 252.3 328 44.2
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 7.6e-65 251.5 332 43.1
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.7e-64 250.4 340 40.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.7e-64 250.4 208 59.6
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 2.9e-64 249.6 333 41.7
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 4.9e-64 248.8 330 42.1
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 6.4e-64 248.4 334 41.0
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 8.4e-64 248.1 335 42.1
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 1.1e-63 247.7 335 40.3
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.4e-63 246.5 335 40.0
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.2e-63 246.1 333 42.0
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 5.4e-63 245.4 332 40.7
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.0e-61 241.1 332 39.8
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.0e-61 241.1 332 39.8
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 2.3e-61 240.0 333 41.4
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 5.1e-61 238.8 332 39.5
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 5.1e-61 238.8 344 40.4
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 6.7e-61 238.4 172 62.8
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.1e-60 237.7 182 59.3
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 3.3e-60 236.1 336 39.9
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 9.6e-60 234.6 344 39.8
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 9.6e-60 234.6 173 64.2
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 9.6e-60 234.6 305 42.3
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.8e-59 233.0 336 39.9
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 4.8e-59 232.3 182 58.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.4e-58 230.7 333 40.5
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 5.3e-58 228.8 187 59.4
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 6.9e-58 228.4 182 58.2
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 9.0e-58 228.0 305 40.7
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 2.6e-57 226.5 340 39.4
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.6e-57 226.5 184 57.6
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.6e-54 217.2 303 40.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.7e-54 216.5 173 58.4
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 3.3e-52 209.5 281 47.0
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 7.4e-52 208.4 332 38.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 9.0e-50 201.4 343 35.6
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 1.9e-47 193.7 188 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 9.3e-47 191.4 348 34.5
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 9.3e-47 191.4 185 50.8
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 7.4e-44 181.8 173 50.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-42 176.4 126 63.5
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-42 176.4 126 63.5
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-42 176.4 126 63.5
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-42 176.4 126 63.5
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 3.8e-40 169.5 267 38.6
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 2.5e-39 166.8 200 43.0
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.7e-35 154.1 98 67.3
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.0e-32 144.8 245 36.3
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 4.2e-31 139.4 94 68.1
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.8e-21 107.5 135 43.0
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-17 92.4 69 60.9
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.3e-16 91.3 131 38.9
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 5.7e-12 75.9 81 44.4
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 9.1e-10 68.6 120 33.3
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 5.9e-09 65.9 81 39.5
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 5.9e-09 65.9 104 32.7
DCAR_010004 Daucus carota HOM05D002465 ORTHO05D000722 1.7e-08 64.3 33 90.9
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 3.2e-07 60.1 48 52.1
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 7.2e-07 58.9 38 63.2


User provided reference genes

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