Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005020 Daucus carota HOM05D000686 ORTHO05D000512 1.9e-71 272.3 133 100.0
DCAR_014050 Daucus carota HOM05D000686 ORTHO05D000512 3.4e-15 85.5 65 72.3
DCAR_023119 Daucus carota HOM05D000965 ORTHO05D000842 7.5e-15 84.3 52 76.9
DCAR_010121 Daucus carota HOM05D000686 ORTHO05D000512 7.3e-10 67.8 66 56.1
DCAR_010119 Daucus carota HOM05D000686 ORTHO05D000512 1.6e-09 66.6 66 56.1
EL10Ac9g22927 Beta vulgaris HOM05D000686 ORTHO05D000512 6.1e-09 64.7 92 40.2
PGR142G1815 Punica granatum HOM05D000686 ORTHO05D000512 6.1e-09 64.7 70 50.0
RcHm_v2.0_Chr2g0087851 Rosa chinensis HOM05D000686 ORTHO05D000512 1.8e-08 63.2 44 72.7
AUR62017680 Chenopodium quinoa HOM05D000686 ORTHO05D000512 2.3e-08 62.8 48 60.4
QL11p044650 Quercus lobata HOM05D000686 ORTHO05D000512 3.1e-08 62.4 44 68.2
DCAR_010120 Daucus carota HOM05D000686 ORTHO05D000512 4.0e-08 62.0 66 53.0
Duzib177G1071 Durio zibethinus HOM05D000686 ORTHO05D000512 4.0e-08 62.0 44 70.5
Thecc.04G053600 Theobroma cacao HOM05D000686 ORTHO05D000512 4.0e-08 62.0 62 50.0
Cpa.g.sc21.243 Carica papaya HOM05D000686 ORTHO05D000512 5.2e-08 61.6 45 60.0
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 5.2e-08 61.6 43 65.1
Ah.01g001610 Amaranthus hybridus HOM05D000686 ORTHO05D000512 6.8e-08 61.2 76 43.4
Ah.07g198420 Amaranthus hybridus HOM05D000686 ORTHO05D000512 6.8e-08 61.2 76 43.4
Phvul.011G004100 Phaseolus vulgaris HOM05D000686 ORTHO05D000512 6.8e-08 61.2 44 61.4
QL11p044636 Quercus lobata HOM05D000686 ORTHO05D000512 6.8e-08 61.2 44 65.9
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 6.8e-08 61.2 43 65.1
vmacro00910 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 6.8e-08 61.2 44 68.2
vmacro23121 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 6.8e-08 61.2 44 68.2
CSS0003685 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 8.9e-08 60.8 44 63.6
Duzib177G1014 Durio zibethinus HOM05D000686 ORTHO05D000512 8.9e-08 60.8 62 53.2
Prupe.2G043900 Prunus persica HOM05D000686 ORTHO05D000512 8.9e-08 60.8 44 65.9
Prupe.8G046000 Prunus persica HOM05D000686 ORTHO05D000512 1.2e-07 60.5 44 65.9
Thecc.08G188900 Theobroma cacao HOM05D000686 ORTHO05D000512 1.2e-07 60.5 44 63.6
FvH4_7g03910 Fragaria vesca HOM05D000686 ORTHO05D000512 1.5e-07 60.1 44 68.2
FAN06G0078 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.5e-07 60.1 44 68.2
Nitab4.5_0000925g0120 Nicotiana tabacum HOM05D000686 ORTHO05D000512 1.5e-07 60.1 44 61.4
vmacro00913 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 1.5e-07 60.1 44 68.2
vmacro23124 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 1.5e-07 60.1 44 68.2
Gohir.D11G174850 Gossypium hirsutum HOM05D000686 ORTHO05D000512 2.0e-07 59.7 44 59.1
Gorai.007G187400 Gossypium raimondii HOM05D000686 ORTHO05D000512 2.0e-07 59.7 44 59.1
FAN03G2931 Fragaria x ananassa HOM05D000686 ORTHO05D000512 3.4e-07 58.9 44 65.9
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.4e-07 58.9 44 59.1
vmacro00904 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 3.4e-07 58.9 44 68.2
CiPaw.03G011600 Carya illinoinensis HOM05D000686 ORTHO05D000512 4.4e-07 58.5 44 65.9
DCAR_001851 Daucus carota HOM05D000686 ORTHO05D000512 4.4e-07 58.5 44 68.2
DCAR_014786 Daucus carota HOM05D000965 ORTHO05D000842 4.4e-07 58.5 64 46.9
FAN02G3399 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.4e-07 58.5 44 65.9
EL10Ac4g08019 Beta vulgaris HOM05D000686 ORTHO05D000512 5.8e-07 58.2 44 61.4
HanXRQChr04g0102531 Helianthus annuus HOM05D000686 ORTHO05D000512 5.8e-07 58.2 45 64.4
HanXRQChr04g0102571 Helianthus annuus HOM05D000686 ORTHO05D000512 5.8e-07 58.2 43 62.8
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.8e-07 58.2 44 56.8
Nitab4.5_0000031g0280 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.8e-07 58.2 44 56.8
Cc10_g16200 Coffea canephora HOM05D000686 ORTHO05D000512 7.5e-07 57.8 42 66.7
Oeu028613.1 Olea europaea HOM05D000686 ORTHO05D000512 7.5e-07 57.8 44 61.4
THA.LOC104821770 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 7.5e-07 57.8 43 65.1
AUR62015214 Chenopodium quinoa HOM05D000686 ORTHO05D000512 9.8e-07 57.4 68 47.1
Peaxi162Scf00314g00116 Petunia axillaris HOM05D000686 ORTHO05D000512 9.8e-07 57.4 44 56.8
TWI74G0661 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 9.8e-07 57.4 44 61.4
Cpa.g.sc21.241 Carica papaya HOM05D000686 ORTHO05D000512 1.3e-06 57.0 44 56.8
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 1.3e-06 57.0 44 61.4
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 1.3e-06 57.0 44 61.4
HanXRQChr04g0102581 Helianthus annuus HOM05D000686 ORTHO05D000512 1.3e-06 57.0 43 62.8
Medtr4g035655 Medicago truncatula HOM05D000686 ORTHO05D000512 1.3e-06 57.0 44 61.4
Nn5g27170 Nelumbo nucifera HOM05D000686 ORTHO05D000512 1.3e-06 57.0 101 38.6
Hund22433 Selenicereus undatus HOM05D000686 ORTHO05D000512 1.3e-06 57.0 48 56.2
Ca_00242_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 1.7e-06 56.6 44 59.1
Ca_30763_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 1.7e-06 56.6 44 59.1
Haze_14019 Corylus avellana HOM05D000686 ORTHO05D000512 1.7e-06 56.6 44 61.4
Duzib133G0167 Durio zibethinus HOM05D000686 ORTHO05D000512 1.7e-06 56.6 44 61.4
TWI81G0232 Tripterygium wilfordii HOM05D000686 ORTHO05D000512 1.7e-06 56.6 44 61.4
Cpa.g.sc21.240 Carica papaya HOM05D000686 ORTHO05D000512 2.2e-06 56.2 44 56.8
Cpa.g.sc21.242 Carica papaya HOM05D000686 ORTHO05D000512 2.2e-06 56.2 44 56.8
MD10G1042000 Malus domestica HOM05D000686 ORTHO05D000512 2.2e-06 56.2 44 63.6
THA.LOC104802571 Tarenaya hassleriana HOM05D000686 ORTHO05D000512 2.2e-06 56.2 43 60.5
A08p11940 Brassica napus HOM05D000686 ORTHO05D000512 2.9e-06 55.8 44 63.6
Carub.0007s2591 Capsella rubella HOM05D000686 ORTHO05D000512 2.9e-06 55.8 43 65.1
CARHR290250 Cardamine hirsuta HOM05D000686 ORTHO05D000512 2.9e-06 55.8 43 65.1
HanXRQChr12g0369111 Helianthus annuus HOM05D000686 ORTHO05D000512 2.9e-06 55.8 44 61.4
Manes.12G054600 Manihot esculenta HOM05D000686 ORTHO05D000512 2.9e-06 55.8 44 61.4
Oeu028612.1 Olea europaea HOM05D000686 ORTHO05D000512 2.9e-06 55.8 45 57.8
TPR.G15127 Trifolium pratense HOM05D000686 ORTHO05D000512 2.9e-06 55.8 44 59.1
BraA08t33184Z Brassica rapa HOM05D000686 ORTHO05D000512 3.7e-06 55.5 43 65.1
Eucgr.F04098 Eucalyptus grandis HOM05D000686 ORTHO05D000512 3.7e-06 55.5 41 63.4
Gohir.D13G124400 Gossypium hirsutum HOM05D000686 ORTHO05D000512 3.7e-06 55.5 44 59.1
HanXRQChr09g0238221 Helianthus annuus HOM05D000686 ORTHO05D000512 3.7e-06 55.5 44 63.6
HanXRQChr09g0238391 Helianthus annuus HOM05D000686 ORTHO05D000512 3.7e-06 55.5 44 63.6
Os02g0471300 Oryza sativa ssp. japonica HOM05D000686 ORTHO05D000512 3.7e-06 55.5 44 63.6
Sp7g14100 Schrenkiella parvula HOM05D000686 ORTHO05D000512 3.7e-06 55.5 43 65.1
Sc06g0001300 Simmondsia chinensis HOM05D000686 ORTHO05D000512 3.7e-06 55.5 66 45.5
MD07G1043700 Malus domestica HOM05D000686 ORTHO05D000512 4.9e-06 55.1 44 63.6
Sc06g0000020 Simmondsia chinensis HOM05D000686 ORTHO05D000512 4.9e-06 55.1 44 59.1
Sc06g0001340 Simmondsia chinensis HOM05D000686 ORTHO05D000512 4.9e-06 55.1 44 59.1
AL7G39570 Arabidopsis lyrata HOM05D000686 ORTHO05D000512 8.3e-06 54.3 43 62.8
BcaC07g37929 Brassica carinata HOM05D000686 ORTHO05D000512 8.3e-06 54.3 43 62.8
BolC8t48310H Brassica oleracea HOM05D000686 ORTHO05D000512 8.3e-06 54.3 43 62.8
Haze_14020 Corylus avellana HOM05D000686 ORTHO05D000512 8.3e-06 54.3 44 59.1
Dinv15091 Davidia involucrata HOM05D000686 ORTHO05D000512 8.3e-06 54.3 49 55.1
MBI03_g28852_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 8.3e-06 54.3 42 64.3


User provided reference genes

Program Settings