Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004920 Daucus carota HOM05D024387 ORTHO05D014203 2.8e-79 298.5 149 100.0
DCAR_022823 Daucus carota HOM05D024387 ORTHO05D014203 8.1e-26 120.9 113 50.4
DCAR_022825 Daucus carota HOM05D024387 ORTHO05D014203 8.1e-26 120.9 113 50.4
DCAR_018175 Daucus carota HOM05D024387 ORTHO05D014203 3.1e-25 119.0 139 44.6
DCAR_031363 Daucus carota HOM05D024387 ORTHO05D014203 3.8e-23 112.1 117 44.4
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 1.1e-11 73.9 140 32.1
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 1.6e-10 70.1 136 32.4
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 2.8e-10 69.3 136 32.4
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 3.7e-10 68.9 143 34.3
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-10 67.8 145 31.0
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-10 67.8 135 32.6
Eucgr.B00585 Eucalyptus grandis HOM05D000003 ORTHO05D000022 8.1e-10 67.8 138 32.6
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-09 67.4 139 33.8
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 1.4e-09 67.0 136 31.6
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-09 66.6 135 32.6
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.4e-09 66.2 119 32.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-09 65.9 146 32.2
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 5.3e-09 65.1 136 32.4
DCAR_005480 Daucus carota HOM05D014268 ORTHO05D014203 6.9e-09 64.7 135 28.1
DCAR_022724 Daucus carota HOM05D014268 ORTHO05D014203 6.9e-09 64.7 135 28.1
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-09 64.3 145 32.4
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-08 63.9 135 33.3
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-08 63.9 145 29.0
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.5e-08 63.5 145 29.0
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.5e-08 63.5 145 29.0
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-08 63.2 109 35.8
Atru.chr1.1867 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-08 62.8 109 34.9
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-08 62.8 146 32.2
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 2.6e-08 62.8 135 29.6
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-08 62.8 134 32.1
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-08 62.4 145 30.3
CSS0010996 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.4e-08 62.4 106 34.9
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.4e-08 62.4 150 28.0
DCAR_005058 Daucus carota HOM05D014268 ORTHO05D014203 4.5e-08 62.0 135 26.7
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-08 61.6 149 31.5
CSS0049818 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.8e-08 61.6 145 29.0
CSS0006381 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.6e-08 61.2 127 30.7
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 7.6e-08 61.2 135 29.6
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 9.9e-08 60.8 137 35.0
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.5 143 32.2
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.5 143 32.2
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.5 150 32.0
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 1.3e-07 60.5 139 28.8
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-07 60.1 149 31.5
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-07 60.1 109 36.7
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.7e-07 60.1 138 29.7
DCAR_017375 Daucus carota HOM05D014268 ORTHO05D014203 1.7e-07 60.1 135 25.9
DCAR_018063 Daucus carota HOM05D014268 ORTHO05D014203 1.7e-07 60.1 135 25.9
DCAR_024809 Daucus carota HOM05D014268 ORTHO05D014203 1.7e-07 60.1 135 25.9
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-07 59.7 153 29.4
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-07 59.7 145 32.4
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 2.2e-07 59.7 131 29.0
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 2.2e-07 59.7 143 28.7
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-07 59.3 150 32.0
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-07 59.3 145 26.9
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-07 59.3 145 26.9
DCAR_015095 Daucus carota HOM05D009293 ORTHO05D010455 2.9e-07 59.3 108 31.5
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.9e-07 59.3 135 28.9
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-07 58.9 138 33.3
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-07 58.9 102 37.3
arahy.Tifrunner.gnm1.ann1.Y0B8H2 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.8e-07 58.9 66 43.9
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 3.8e-07 58.9 113 36.3
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 3.8e-07 58.9 113 36.3
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-07 58.5 139 29.5
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 4.9e-07 58.5 113 36.3
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 4.9e-07 58.5 135 28.1
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 4.9e-07 58.5 137 30.7
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-07 58.2 139 32.4
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 6.4e-07 58.2 153 29.4
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 6.4e-07 58.2 147 27.9
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 6.4e-07 58.2 139 28.8
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 6.4e-07 58.2 141 31.2
arahy.Tifrunner.gnm1.ann1.CIE5KM Arachis hypogaea HOM05D000003 ORTHO05D000022 8.4e-07 57.8 66 42.4
THA.LOC104801226 Tarenaya hassleriana HOM05D007909 ORTHO05D000743 1.1e-06 57.4 131 29.0
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-06 57.0 146 29.5
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-06 57.0 138 28.3
Hma1.2p1_0931F.1_g238170 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 1.4e-06 57.0 107 32.7
Atru.chr1.3262 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-06 56.6 134 32.8
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-06 56.6 139 29.5
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.9e-06 56.6 115 31.3
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-06 56.2 145 29.7
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-06 56.2 135 31.1
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-06 56.2 109 32.1
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-06 56.2 145 24.8
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 2.4e-06 56.2 143 29.4
RcHm_v2.0_Chr5g0041491 Rosa chinensis HOM05D000279 ORTHO05D000498 2.4e-06 56.2 134 32.1
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-06 55.5 104 36.5
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-06 55.5 138 30.4
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.2e-06 55.5 134 30.6
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 7.1e-06 54.7 102 36.3
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.1e-06 54.7 138 27.5
Prupe.1G446500 Prunus persica HOM05D000003 ORTHO05D000022 7.1e-06 54.7 138 30.4
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-06 54.3 137 30.7
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.3e-06 54.3 138 26.8
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.3e-06 54.3 138 26.8


User provided reference genes

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