Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 0.0e+00 1635.2 839 100.0
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 8.4e-88 329.3 865 31.3
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 1.1e-84 318.9 975 29.7
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 9.4e-71 272.7 872 29.6
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.6e-70 271.9 903 29.2
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 4.2e-63 247.3 989 25.1
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 5.5e-63 246.9 972 27.1
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 4.7e-62 243.8 999 27.2
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 3.3e-60 237.7 1014 25.6
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 9.7e-60 236.1 917 26.6
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 6.3e-59 233.4 1083 25.4
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 2.4e-58 231.5 991 25.1
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.7e-56 225.3 839 26.1
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.7e-56 225.3 894 27.9
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 1.1e-55 222.6 881 26.9
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 2.5e-55 221.5 913 26.6
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 5.5e-55 220.3 938 27.1
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 5.5e-55 220.3 840 25.1
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 9.4e-55 219.5 965 24.4
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 4.0e-53 214.2 854 28.7
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 1.5e-52 212.2 913 27.4
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 5.7e-52 210.3 935 25.8
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 1.6e-49 202.2 756 26.9
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 2.2e-48 198.4 1010 25.0
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 5.0e-48 197.2 1012 24.6
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.4e-45 189.1 948 26.4
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 5.2e-45 187.2 999 23.8
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 6.8e-45 186.8 939 22.3
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 2.6e-44 184.9 940 22.2
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 2.6e-44 184.9 947 26.3
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 2.2e-43 181.8 364 33.8
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 2.8e-43 181.4 947 26.1
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.3e-43 179.9 627 27.6
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 1.4e-42 179.1 974 23.9
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 2.4e-42 178.3 625 28.2
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 3.1e-42 177.9 926 25.3
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 2.0e-41 175.3 965 24.7
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.5e-41 174.1 937 22.4
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 4.5e-41 174.1 976 24.5
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 5.9e-41 173.7 953 23.7
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.0e-40 172.9 563 28.4
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 2.3e-40 171.8 856 24.4
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-40 171.8 557 28.2
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 2.9e-40 171.4 904 24.6
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 3.8e-40 171.0 983 22.1
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.9e-39 168.7 667 25.5
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 2.1e-38 165.2 978 23.7
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.7e-38 164.1 570 27.9
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 1.0e-37 162.9 841 26.0
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 5.2e-37 160.6 856 25.1
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 1.7e-35 155.6 972 22.8
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 4.9e-35 154.1 356 30.9
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 8.3e-35 153.3 976 23.1
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 2.4e-34 151.8 886 24.0
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 4.5e-33 147.5 874 25.2
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 5.9e-33 147.1 818 21.5
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 1.7e-32 145.6 603 27.0
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 6.6e-32 143.7 606 25.7
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.5e-31 141.7 255 36.1
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.3e-31 141.4 995 20.9
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 9.5e-31 139.8 469 28.6
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 2.1e-30 138.7 521 27.6
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 4.7e-30 137.5 508 27.4
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 8.0e-30 136.7 498 27.7
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 3.1e-29 134.8 480 28.8
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 2.0e-28 132.1 922 22.0
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 2.6e-28 131.7 222 39.6
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 3.4e-28 131.3 475 28.0
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 5.8e-28 130.6 364 29.9
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 9.8e-28 129.8 570 27.9
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 2.2e-27 128.6 574 25.4
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 6.4e-27 127.1 542 26.2
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 6.4e-27 127.1 580 25.3
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 4.6e-25 120.9 556 24.3
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 1.0e-24 119.8 364 28.6
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 9.5e-23 113.2 271 33.9
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 2.8e-22 111.7 473 25.4
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 6.2e-22 110.5 530 27.4
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 2.6e-20 105.1 219 36.5
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 2.6e-20 105.1 291 29.9
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 3.2e-18 98.2 281 26.0
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 1.9e-15 89.0 595 22.4
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 4.7e-14 84.3 278 28.8
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.2e-09 69.7 183 29.5
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 5.1e-08 64.3 184 27.2
Actinidia38851 Actinidia chinensis HOM05D007562 ORTHO05D009721 9.6e-07 60.1 148 31.8
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 2.8e-06 58.5 290 23.8


User provided reference genes

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