Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 4.8e-307 1057.0 528 100.0
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.5e-210 735.7 552 69.4
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.8e-208 729.6 551 68.8
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 3.8e-203 711.8 413 88.6
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 5.0e-203 711.4 552 67.0
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.5e-202 709.1 555 66.8
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 7.9e-201 704.1 554 67.7
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.7e-200 701.0 553 66.2
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.4e-197 692.6 551 67.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.5e-196 688.3 552 65.2
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.0e-195 687.2 555 64.1
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.0e-195 687.2 553 65.3
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.3e-195 686.8 559 65.5
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.3e-195 686.8 604 61.1
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.9e-195 685.6 553 65.6
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.8e-195 685.3 553 65.1
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.0e-195 684.9 557 66.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.5e-194 682.6 558 66.1
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.1e-193 679.5 559 65.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 2.1e-193 679.5 555 64.9
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.7e-193 679.1 555 65.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 8.0e-193 677.6 552 64.3
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.4e-192 676.8 537 67.0
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.4e-192 676.8 558 65.6
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-192 676.4 558 65.6
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.1e-191 673.7 553 64.7
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.6e-191 672.5 558 63.8
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.3e-191 672.2 552 65.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 5.7e-191 671.4 556 65.8
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.1e-189 667.2 567 63.0
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 2.4e-189 666.0 549 63.6
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 5.3e-189 664.8 554 64.8
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.0e-187 660.6 536 65.7
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.3e-187 660.2 541 65.1
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.7e-187 659.8 553 63.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.9e-187 659.1 553 63.8
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.1e-186 657.1 538 66.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 9.4e-186 654.1 554 63.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.2e-185 653.7 553 64.7
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.7e-185 652.5 517 65.0
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 3.6e-185 652.1 550 63.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 5.2e-184 648.3 552 63.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 2.6e-183 646.0 559 62.4
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 2.6e-183 646.0 550 63.6
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 7.5e-183 644.4 610 59.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.7e-182 643.3 559 62.6
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.2e-182 642.9 550 63.8
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.3e-182 641.3 560 62.5
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 6.3e-182 641.3 564 62.9
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.4e-181 640.2 560 63.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 2.4e-181 639.4 635 57.3
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 7.7e-180 634.4 556 62.8
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.3e-179 633.6 550 62.7
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 6.5e-179 631.3 559 61.4
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.6e-177 625.5 556 62.2
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.4e-175 619.0 556 61.7
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.4e-175 618.6 558 60.8
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 4.8e-174 615.1 548 61.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 6.3e-174 614.8 556 61.5
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.8e-173 613.2 543 61.7
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 2.4e-173 612.8 530 62.3
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.4e-173 612.8 534 62.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.0e-172 609.8 558 60.9
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.5e-172 609.0 558 60.6
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.5e-172 608.6 495 66.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 4.5e-172 608.6 558 61.1
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 7.7e-172 607.8 585 58.1
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.7e-172 607.8 576 59.0
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.0e-171 605.1 576 58.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.2e-169 600.5 548 61.5
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.6e-169 600.1 555 58.9
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 6.1e-169 598.2 550 61.1
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 6.8e-168 594.7 563 59.1
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.2e-167 594.0 543 61.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.4e-167 592.4 561 59.4
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.3e-166 590.5 561 59.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.2e-166 589.7 540 61.7
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.9e-166 588.6 690 50.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.9e-166 588.6 564 58.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.4e-165 587.0 563 58.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.1e-165 585.5 691 49.9
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.6e-164 583.6 569 59.8
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.5e-164 582.0 544 59.9
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.9e-162 576.6 581 55.8
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 9.5e-162 574.3 559 58.9
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 9.5e-162 574.3 554 59.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.6e-161 573.5 636 53.9
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.1e-161 573.2 562 57.8
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.2e-158 563.1 568 55.5
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 3.7e-158 562.4 560 57.1
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 6.4e-158 561.6 554 56.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.4e-157 559.7 556 57.2
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.2e-156 557.4 570 56.0
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.6e-156 557.0 467 63.6
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.7e-156 556.2 468 63.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 6.0e-156 555.1 557 57.1
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.0e-155 554.3 539 58.8
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.5e-154 549.7 547 58.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.1e-153 546.6 508 60.2
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 3.1e-152 542.7 539 57.3
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 2.5e-146 523.1 573 54.8
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 4.3e-146 522.3 573 54.8
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 4.3e-146 522.3 573 54.8
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.8e-144 516.9 572 54.7
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 8.9e-144 514.6 572 54.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 5.4e-141 505.4 451 62.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 5.4e-133 478.8 559 51.2
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.2e-132 477.6 535 52.5
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 7.3e-130 468.4 567 49.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.1e-125 454.5 579 47.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.6e-121 439.5 538 48.0
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 7.6e-119 431.8 414 59.7
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.4e-117 426.8 388 58.2
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.0e-115 421.4 555 46.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.1e-96 356.7 303 63.4
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.2e-95 354.8 451 51.7
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.5e-93 347.1 549 42.3
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.3e-88 329.3 552 39.3
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.2e-73 280.8 495 39.8
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.8e-72 277.7 342 45.6
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 4.5e-71 273.1 305 50.8
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 4.2e-53 213.4 263 44.1
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.4e-32 144.4 128 64.1
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.5e-29 134.4 88 73.9
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.3e-25 122.1 86 70.9
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.0e-22 110.9 121 52.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.2e-20 105.5 84 64.3
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.8e-19 101.7 200 31.5
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.0e-19 100.5 230 31.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.6e-18 97.8 235 30.6
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.3e-17 95.5 240 31.2
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.7e-17 95.1 73 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.3e-14 85.5 194 30.4
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 6.9e-11 73.2 82 59.8


User provided reference genes

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