Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.8e-293 1011.9 545 100.0
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.5e-283 976.5 598 90.1
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.7e-251 872.5 589 79.1
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.9e-251 871.3 597 78.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.6e-249 864.8 597 79.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.6e-249 864.8 597 79.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.0e-244 847.4 599 77.1
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 8.1e-241 837.0 597 75.4
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.4e-240 836.3 595 75.3
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.6e-239 832.0 595 74.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.8e-238 828.2 595 75.0
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 6.4e-238 827.4 595 75.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.1e-237 826.6 599 74.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.4e-237 824.3 595 74.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 7.1e-237 823.9 595 74.3
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 7.1e-237 823.9 595 74.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.2e-236 823.2 600 77.2
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.0e-235 820.1 595 75.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.3e-235 819.7 595 77.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.5e-234 816.2 596 75.0
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 4.8e-233 811.2 597 73.7
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.2e-231 806.6 597 76.2
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.5e-231 806.2 593 74.2
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.4e-229 798.9 596 74.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 5.4e-229 797.7 595 73.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.2e-228 796.6 598 74.7
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.5e-228 795.0 595 71.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 7.9e-228 793.9 594 73.1
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.3e-227 793.1 597 73.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.3e-227 793.1 594 72.4
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.0e-227 792.0 594 71.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.4e-226 787.3 598 73.4
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.3e-225 786.6 594 72.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.1e-225 785.8 596 73.3
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 8.1e-225 783.9 593 72.2
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.4e-224 783.1 595 71.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 3.1e-224 781.9 587 72.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 9.0e-224 780.4 594 69.0
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.5e-223 779.6 593 70.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 5.8e-223 777.7 595 70.4
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.6e-223 777.3 596 74.2
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.3e-222 776.5 607 68.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.4e-221 773.1 597 71.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.9e-221 772.7 595 71.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.6e-220 768.1 595 69.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-219 765.4 606 65.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.9e-219 765.0 595 70.4
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.1e-219 764.6 592 71.1
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.1e-219 764.6 595 69.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.1e-219 764.6 594 70.2
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.1e-219 764.6 597 69.8
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 8.7e-219 763.8 595 69.6
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 8.7e-219 763.8 597 69.3
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-218 763.5 606 65.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 9.6e-218 760.4 593 70.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.8e-217 758.1 606 68.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.5e-215 751.5 601 70.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.0e-214 750.4 600 70.5
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.0e-214 750.4 543 71.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.1e-213 746.9 595 69.9
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.5e-213 745.7 595 69.6
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.5e-213 745.7 596 66.9
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.6e-212 741.5 611 68.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 4.6e-212 741.5 602 68.3
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.9e-212 740.7 600 66.8
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.0e-211 740.3 602 67.6
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-211 740.3 600 67.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.8e-211 739.6 602 67.3
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.8e-211 739.6 600 67.3
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.9e-211 738.4 602 67.1
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.7e-211 737.3 602 66.9
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 8.7e-211 737.3 602 66.6
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.4e-208 729.9 600 67.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.4e-208 729.9 602 66.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.9e-207 724.5 607 65.6
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.7e-206 723.0 599 67.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.9e-206 722.2 612 66.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.9e-206 722.2 592 69.1
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.8e-206 721.8 606 66.8
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 8.5e-206 720.7 590 68.0
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-205 720.3 600 66.2
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.4e-205 719.9 596 65.8
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 5.5e-205 718.0 600 65.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 7.2e-205 717.6 595 65.0
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 7.2e-205 717.6 595 65.0
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 7.2e-205 717.6 592 68.8
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.3e-205 717.2 600 66.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-204 716.5 597 67.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 7.9e-204 714.1 599 65.8
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-203 713.4 601 65.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-203 713.0 596 65.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-203 713.0 596 65.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.8e-203 713.0 596 65.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.0e-203 712.2 604 64.6
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.9e-203 711.8 603 65.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.9e-203 711.8 588 66.0
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.4e-202 707.6 606 66.0
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.7e-201 705.3 597 64.2
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.7e-201 705.3 606 64.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-201 704.9 597 63.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 4.8e-201 704.9 600 64.3
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-200 703.7 870 51.1
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 6.9e-200 701.0 595 67.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.2e-199 700.3 589 67.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.6e-199 699.1 602 64.8
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.1e-196 689.5 563 65.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.3e-195 686.0 600 65.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.6e-194 682.6 581 64.9
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.8e-193 679.1 559 69.1
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 8.0e-188 661.0 625 61.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.2e-187 658.3 604 61.4
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.7e-186 654.8 585 62.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-185 652.5 604 60.9
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.2e-183 647.1 605 62.3
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-182 641.7 548 64.6
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 9.4e-181 637.5 546 61.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.1e-180 634.8 469 71.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 8.0e-180 634.4 609 57.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 2.1e-172 609.8 596 59.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.8e-171 604.4 549 60.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.0e-167 593.2 550 61.1
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.8e-139 498.4 517 60.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.5e-133 478.0 441 63.5
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.6e-122 443.4 600 45.5
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.4e-122 443.0 599 48.4
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 7.1e-120 435.3 601 45.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.6e-106 390.2 614 40.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 4.0e-99 366.3 601 44.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-97 361.7 243 74.9
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.9e-97 360.1 589 41.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 7.4e-93 345.5 209 81.8
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.4e-61 240.0 233 61.4
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 7.5e-61 239.2 622 29.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-60 237.7 275 52.7
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.6e-49 199.5 148 68.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.3e-48 197.2 561 27.5
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.1e-43 182.2 151 63.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.5e-37 161.8 235 51.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 5.6e-32 143.3 98 70.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-29 135.6 201 41.8
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 8.1e-23 112.8 78 64.1
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.4e-22 112.1 72 76.4
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-22 111.3 160 60.6
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.8e-22 109.8 78 62.8
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 7.1e-19 99.8 391 23.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 6.0e-18 96.7 115 44.3
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.9e-12 77.8 59 62.7
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 6.0e-10 70.1 64 50.0
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 5.3e-06 57.0 90 37.8


User provided reference genes

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