Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.5e-187 659.4 351 100.0
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.6e-120 436.8 375 62.9
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.6e-117 426.8 369 63.1
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 1.4e-116 423.7 368 63.9
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.3e-116 422.9 368 62.2
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 5.2e-116 421.8 369 60.4
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.0e-115 419.9 369 62.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 9.9e-115 417.5 372 63.7
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 9.9e-115 417.5 368 60.6
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 9.9e-115 417.5 367 62.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.3e-114 417.2 369 60.4
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 1.3e-114 417.2 367 60.8
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.7e-114 416.8 369 60.2
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 4.9e-114 415.2 373 61.1
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.4e-114 414.8 369 61.5
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 8.3e-114 414.5 371 59.8
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-113 414.1 368 60.1
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.2e-113 412.5 377 60.5
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.2e-113 412.5 369 60.4
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 3.2e-113 412.5 367 59.9
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 4.1e-113 412.1 368 59.8
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 7.1e-113 411.4 374 59.6
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.2e-112 410.6 371 61.7
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.2e-112 410.6 368 59.8
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 2.7e-112 409.5 369 58.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.7e-112 409.5 354 64.4
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.5e-112 409.1 372 60.8
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 7.8e-112 407.9 366 59.0
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 7.8e-112 407.9 371 59.0
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.3e-111 407.1 375 58.9
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.7e-111 406.8 377 59.7
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.7e-111 406.8 408 55.6
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 3.0e-111 406.0 370 59.7
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 3.9e-111 405.6 367 59.9
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 5.1e-111 405.2 367 59.9
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.1e-111 405.2 368 61.4
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.1e-111 405.2 368 61.4
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 5.1e-111 405.2 365 60.0
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-110 404.1 368 60.9
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.5e-110 403.7 366 61.7
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.5e-110 402.9 371 60.4
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.5e-110 402.9 368 59.8
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 5.6e-110 401.7 365 60.0
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 5.6e-110 401.7 372 59.4
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 7.3e-110 401.4 367 59.4
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 2.8e-109 399.4 373 59.0
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.7e-109 398.7 372 60.2
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 8.1e-109 397.9 364 58.5
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 8.1e-109 397.9 370 60.0
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.1e-108 397.5 367 58.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-108 396.4 367 61.0
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 5.2e-108 395.2 376 59.3
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 6.8e-108 394.8 403 55.8
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.2e-107 394.0 366 59.3
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 4.4e-107 392.1 370 58.1
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 7.6e-107 391.3 367 59.4
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 9.9e-107 391.0 367 57.5
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.3e-106 390.6 362 58.6
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.3e-106 390.6 370 59.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.7e-106 390.2 378 57.1
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 2.9e-106 389.4 391 56.0
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.8e-106 389.0 370 58.1
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 4.9e-106 388.7 355 60.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 3.2e-105 386.0 369 58.3
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 7.1e-105 384.8 376 57.2
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 9.3e-105 384.4 366 58.2
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 2.1e-104 383.3 410 55.1
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.5e-102 376.3 369 56.6
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 3.3e-102 375.9 365 56.7
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 5.6e-102 375.2 408 54.7
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 3.6e-101 372.5 367 56.7
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 8.1e-101 371.3 390 57.7
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 3.1e-100 369.4 355 57.5
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 5.3e-100 368.6 381 59.1
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 6.9e-100 368.2 369 55.3
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 9.0e-100 367.9 380 56.1
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 9.0e-100 367.9 378 60.1
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 5.8e-99 365.2 356 58.1
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 7.6e-99 364.8 389 57.3
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.7e-98 363.6 394 56.3
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 3.8e-98 362.5 402 54.2
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.9e-97 360.1 385 57.1
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.2e-97 359.4 390 56.4
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.6e-96 357.1 392 55.9
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.1e-96 356.7 407 55.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.5e-96 355.9 362 55.8
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 7.8e-96 354.8 405 55.1
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 7.8e-96 354.8 404 55.0
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 7.8e-96 354.8 400 55.8
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.7e-95 353.6 395 56.5
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.7e-95 353.6 375 57.6
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 6.6e-95 351.7 396 51.8
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.1e-94 350.9 384 52.9
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 5.6e-94 348.6 404 56.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 7.3e-94 348.2 409 55.3
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 7.3e-94 348.2 352 54.5
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.6e-93 347.1 377 53.1
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 2.8e-93 346.3 408 53.9
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.4e-92 344.0 406 54.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.8e-92 343.6 407 54.8
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.8e-92 343.6 411 54.5
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 9.0e-92 341.3 410 54.6
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.3e-90 337.4 409 54.8
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.7e-90 337.0 314 60.5
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 8.4e-90 334.7 357 58.3
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.5e-86 323.9 393 49.6
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 9.6e-86 321.2 357 52.9
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 2.4e-84 316.6 366 51.4
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.3e-84 315.5 352 53.4
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 3.8e-82 309.3 426 44.1
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.1e-76 291.2 326 50.9
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 3.8e-66 256.1 270 52.2
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.3e-53 214.5 480 34.6
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 4.8e-53 212.6 402 38.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.4e-52 211.1 367 38.4
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 7.7e-51 205.3 277 50.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.5e-49 201.1 199 57.8
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.5e-49 201.1 199 57.8
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.5e-49 201.1 199 57.8
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.3e-45 188.0 292 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.0e-42 176.0 527 30.9
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.6e-40 171.0 368 40.2
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.7e-40 169.5 129 65.9
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.7e-37 161.0 143 58.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.1e-36 158.3 378 34.4
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.1e-32 144.1 145 56.6
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.0e-31 140.2 193 53.4
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.1e-25 121.7 174 44.3
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 8.9e-23 112.1 311 29.9
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.2e-20 103.6 181 40.3
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 7.8e-19 99.0 375 25.3
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 7.8e-19 99.0 375 25.3
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.1e-17 95.1 106 53.8
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-11 74.7 45 75.6
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.3e-09 67.0 134 35.1
DCAR_031559 Daucus carota HOM05D037052 ORTHO05D177761 6.2e-08 62.8 35 85.7
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.8e-07 61.2 77 45.5


User provided reference genes

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