Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 8.5e-186 653.7 366 100.0
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 1.6e-78 297.4 366 47.3
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 7.7e-78 295.0 338 51.8
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 9.4e-76 288.1 322 50.3
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.4e-74 284.3 369 47.4
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 2.0e-73 280.4 366 47.8
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 1.4e-71 274.2 365 45.5
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.8e-71 273.9 363 45.7
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 7.0e-71 271.9 362 46.7
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 1.6e-70 270.8 360 46.1
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 2.0e-70 270.4 360 46.4
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.5e-70 269.2 365 44.9
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 4.5e-70 269.2 365 43.0
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 3.8e-69 266.2 358 45.3
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 5.0e-69 265.8 324 50.0
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 5.0e-69 265.8 338 47.0
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.9e-68 263.8 365 44.1
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 2.5e-68 263.5 352 45.7
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 5.5e-68 262.3 374 44.1
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 7.2e-68 261.9 380 45.0
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 9.4e-68 261.5 316 52.5
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 9.4e-68 261.5 368 45.9
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 1.6e-67 260.8 359 44.3
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 3.6e-67 259.6 380 43.9
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 4.7e-67 259.2 360 45.8
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.4e-66 257.7 367 44.1
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 4.0e-66 256.1 358 43.9
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 6.8e-66 255.4 362 43.4
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 5.7e-65 252.3 371 42.6
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 1.7e-64 250.8 355 42.3
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 2.2e-64 250.4 358 45.3
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 2.8e-64 250.0 324 44.1
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 2.8e-64 250.0 357 45.7
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 8.3e-64 248.4 324 43.8
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 2.4e-63 246.9 358 44.4
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 4.1e-63 246.1 367 43.3
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.2e-62 244.6 324 42.9
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 5.0e-61 239.2 346 43.1
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 1.2e-59 234.6 365 40.8
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 4.7e-59 232.6 362 42.5
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 1.4e-58 231.1 375 41.1
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 3.0e-58 229.9 325 44.9
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 5.2e-58 229.2 355 41.4
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 8.8e-58 228.4 365 41.9
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 2.0e-57 227.3 364 43.4
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 5.7e-57 225.7 357 41.2
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 2.2e-56 223.8 357 41.2
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 3.7e-56 223.0 366 40.2
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 4.9e-56 222.6 339 42.8
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 6.3e-56 222.2 356 42.1
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 8.3e-56 221.9 347 43.2
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 7.0e-55 218.8 358 39.7
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 9.2e-55 218.4 341 41.1
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 5.9e-54 215.7 312 43.9
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 3.8e-53 213.0 341 40.5
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 8.6e-53 211.8 325 42.2
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 2.5e-52 210.3 274 47.4
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 5.6e-52 209.1 346 40.2
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 1.6e-51 207.6 264 48.5
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 4.7e-51 206.1 339 41.9
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 2.6e-49 200.3 332 38.9
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 2.6e-49 200.3 311 41.8
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 3.4e-49 199.9 351 39.0
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 5.7e-49 199.1 333 39.6
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 1.7e-48 197.6 284 44.4
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 3.7e-48 196.4 355 38.3
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 5.0e-45 186.0 368 35.9
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 1.1e-44 184.9 266 44.7
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 3.3e-44 183.3 266 44.4
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 3.3e-44 183.3 302 40.1
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 4.3e-44 183.0 316 38.9
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 4.7e-43 179.5 339 39.8
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 4.7e-43 179.5 339 39.8
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 4.0e-42 176.4 304 38.2
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 7.5e-41 172.2 333 40.5
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 1.7e-40 171.0 202 51.0
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 1.1e-39 168.3 275 37.1
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 9.2e-39 165.2 211 46.4
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 2.7e-38 163.7 283 38.9
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.0e-37 161.8 264 42.8
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 3.3e-36 156.8 281 38.1
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 2.3e-34 150.6 214 44.4
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.3e-34 150.6 333 38.7
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 8.9e-34 148.7 333 38.4
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 2.6e-33 147.1 331 32.6
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 7.5e-33 145.6 292 37.3
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 3.7e-32 143.3 383 30.8
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 1.0e-29 135.2 369 31.7
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 5.1e-29 132.9 368 30.7
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 1.2e-27 128.3 133 51.1
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 1.6e-27 127.9 355 31.8
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 8.9e-26 122.1 372 28.2
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 1.5e-25 121.3 356 32.3
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 1.5e-25 121.3 363 30.6
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 2.0e-25 120.9 357 30.8
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 4.4e-25 119.8 359 30.6
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 1.7e-24 117.9 151 46.4
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 2.9e-24 117.1 372 31.7
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 3.8e-24 116.7 357 31.1
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 3.8e-24 116.7 365 30.1
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 3.8e-24 116.7 357 31.1
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.6e-22 111.3 134 46.3
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 9.6e-20 102.1 324 27.8
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 3.1e-18 97.1 278 29.5
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 2.6e-17 94.0 290 26.6
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 5.8e-17 92.8 277 28.9
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.3e-16 91.7 236 32.6
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 1.7e-16 91.3 102 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.1e-15 88.6 301 27.2
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 5.4e-15 86.3 106 47.2
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 4.3e-12 76.6 319 26.3
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.4e-10 70.9 107 38.3
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.4e-10 70.9 107 38.3
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 6.0e-06 56.2 79 40.5


User provided reference genes

Program Settings