Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 0.0e+00 1216.1 683 100.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.4e-296 1020.0 682 81.2
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.7e-294 1015.0 684 82.6
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.6e-294 1014.2 682 81.1
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.3e-293 1012.7 682 80.6
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.3e-293 1011.9 677 82.0
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 689 79.8
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.3e-291 1006.1 655 82.4
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.6e-289 998.4 681 80.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.8e-288 994.6 667 79.6
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 5.0e-288 994.2 681 80.6
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.9e-287 992.3 685 80.0
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.2e-287 991.1 675 80.6
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.6e-286 989.2 683 77.6
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 4.6e-286 987.6 678 80.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.4e-285 986.1 675 80.1
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.3e-285 985.3 675 80.3
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.3e-285 985.3 681 79.7
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.0e-285 984.9 746 73.9
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.9e-285 984.6 746 73.9
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.7e-285 983.8 679 80.3
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 5.7e-284 980.7 679 80.7
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.3e-283 979.5 678 79.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 3.7e-283 978.0 679 78.8
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 4.8e-283 977.6 668 80.1
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.4e-282 976.1 683 79.6
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.8e-282 975.7 678 78.2
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 6.9e-282 973.8 679 79.4
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 9.1e-282 973.4 680 78.5
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.2e-281 973.0 682 81.7
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 4.5e-281 971.1 678 79.8
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 5.9e-281 970.7 680 79.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 7.7e-281 970.3 682 77.1
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 7.7e-281 970.3 683 79.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.0e-280 969.9 679 77.8
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.0e-280 969.9 679 79.8
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 2.9e-280 968.4 688 76.6
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 4.2e-279 964.5 680 78.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 7.2e-279 963.8 679 79.1
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 7.2e-279 963.8 682 77.9
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 1.6e-278 962.6 683 76.7
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.6e-278 962.6 687 76.4
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.7e-278 961.1 688 77.0
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.7e-278 961.1 681 78.4
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.4e-277 959.5 679 78.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.8e-277 959.1 688 76.6
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.8e-277 959.1 660 77.7
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.3e-277 958.7 683 77.2
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.8e-277 956.8 679 80.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.3e-276 954.9 653 79.2
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.4e-276 954.5 692 76.9
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 5.7e-276 954.1 681 77.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.3e-275 953.0 660 77.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.8e-275 951.8 688 78.1
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.4e-274 949.5 685 75.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 7.0e-274 947.2 688 75.9
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.2e-273 946.4 679 77.9
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 7.7e-273 943.7 677 77.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.0e-272 943.3 658 77.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-272 943.3 679 75.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.0e-272 943.3 677 77.5
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 6.5e-272 940.6 679 77.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 2.5e-271 938.7 685 75.3
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 4.2e-271 937.9 687 77.7
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.7e-270 934.5 724 72.7
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-269 932.9 724 72.7
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.3e-269 932.2 687 74.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-268 929.9 728 71.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 4.4e-268 927.9 686 75.1
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 9.7e-268 926.8 685 73.9
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-266 922.5 685 74.9
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.8e-266 922.5 660 76.5
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 5.3e-266 921.0 685 74.7
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 7.0e-266 920.6 685 75.5
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.9e-264 915.2 686 74.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.1e-263 913.3 686 74.3
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 5.5e-263 911.0 683 74.5
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 3.6e-262 908.3 682 74.3
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.8e-261 906.0 682 74.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 4.0e-261 904.8 682 74.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.0e-261 904.8 688 76.5
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 9.8e-260 900.2 685 73.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 8.3e-259 897.1 683 73.8
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 7.0e-258 894.0 676 73.7
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 9.1e-258 893.6 684 73.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 9.1e-258 893.6 684 73.8
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 9.1e-258 893.6 677 71.5
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 2.7e-257 892.1 680 72.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.5e-257 891.3 685 71.7
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.3e-256 889.8 655 75.0
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 5.5e-255 884.4 681 72.7
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 7.2e-255 884.0 716 70.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 6.1e-254 880.9 1029 54.4
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.5e-252 876.3 679 76.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-251 870.5 728 68.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.1e-250 870.2 631 78.1
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.6e-249 866.3 570 82.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 5.0e-248 861.3 685 72.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.5e-247 859.0 679 72.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.6e-246 855.1 713 70.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.1e-242 841.6 679 70.3
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 4.1e-242 841.6 679 70.1
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 7.0e-242 840.9 651 72.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.3e-240 835.9 679 69.5
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.6e-238 828.6 719 66.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 3.6e-238 828.6 670 69.6
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 4.7e-238 828.2 617 75.9
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 8.3e-235 817.4 670 70.6
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.0e-232 808.9 734 65.7
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.0e-232 808.9 664 69.3
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 5.0e-232 808.1 671 69.2
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 4.3e-231 805.1 662 69.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 4.2e-210 735.3 703 63.3
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 5.6e-207 724.9 664 62.2
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.8e-206 722.6 650 62.9
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 3.4e-204 715.7 551 74.2
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.2e-203 713.0 655 62.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 4.9e-203 711.8 675 61.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.5e-164 583.9 419 79.7
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.1e-159 567.8 675 51.6
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.4e-157 560.1 401 79.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.4e-141 506.9 368 74.2
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.9e-126 456.1 360 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 9.2e-125 451.8 559 51.0
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 5.1e-99 366.3 361 60.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 4.3e-82 310.1 496 44.6
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 5.8e-79 299.7 502 44.2
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.9e-77 294.7 273 65.2
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.3e-74 283.9 705 31.9
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.8e-49 200.3 185 62.7
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 5.9e-47 193.4 769 30.0
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.8e-46 190.7 142 73.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.5e-45 186.8 151 67.5
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.0e-43 181.0 119 79.8
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.5e-38 162.9 94 86.2
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 9.4e-37 159.5 255 46.3
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.5e-29 134.8 617 26.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.7e-28 130.6 93 79.6
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.5e-23 114.4 670 22.1
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.6e-18 98.2 715 22.9
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.2e-17 95.1 71 70.4
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.7e-12 77.4 63 71.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.4e-11 75.9 109 50.5
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 2.0e-10 72.0 50 80.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 8.3e-09 66.6 82 52.4
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.9e-08 65.5 43 72.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 8.6e-06 56.6 82 48.8


User provided reference genes

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