Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004537 Daucus carota HOM05D002007 ORTHO05D005759 7.6e-104 380.6 200 100.0
DCAR_000713 Daucus carota HOM05D002007 ORTHO05D005759 3.2e-70 268.9 201 68.2
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 3.6e-53 212.2 204 53.4
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.3e-44 183.0 194 47.9
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 1.5e-43 180.3 199 47.2
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 2.6e-43 179.5 200 44.5
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 4.4e-43 178.7 199 46.7
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 4.4e-43 178.7 202 45.0
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 1.7e-42 176.8 198 48.0
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 1.1e-41 174.1 192 46.4
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.8e-41 173.3 195 45.6
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 2.4e-41 172.9 202 47.0
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 5.4e-41 171.8 201 45.3
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 4.5e-40 168.7 202 43.6
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 4.5e-40 168.7 190 44.2
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 5.9e-40 168.3 190 44.7
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 5.9e-40 168.3 210 42.9
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 7.8e-40 167.9 201 44.3
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 1.3e-39 167.2 200 42.5
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.7e-39 166.8 201 43.8
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 3.3e-38 162.5 202 43.1
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 3.3e-38 162.5 201 46.8
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 5.6e-38 161.8 201 44.3
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 5.6e-38 161.8 199 43.2
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 7.3e-38 161.4 192 42.7
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 7.3e-38 161.4 190 45.8
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 9.5e-38 161.0 201 42.8
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 9.5e-38 161.0 191 41.9
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 9.5e-38 161.0 199 42.7
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 2.8e-37 159.5 199 42.7
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 3.6e-37 159.1 192 44.8
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 4.7e-37 158.7 190 42.6
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 4.7e-37 158.7 200 43.5
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 4.7e-37 158.7 201 45.8
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 6.1e-37 158.3 190 44.7
Potri.004G234500 Populus trichocarpa HOM05D002007 ORTHO05D005759 6.1e-37 158.3 194 45.4
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 3.0e-36 156.0 199 41.7
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 3.0e-36 156.0 191 44.0
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 4.0e-36 155.6 190 44.2
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 6.8e-36 154.8 192 43.2
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 1.2e-35 154.1 192 42.2
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 1.2e-35 154.1 191 41.9
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.5e-35 153.7 160 48.1
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.5e-35 153.7 160 48.1
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 1.5e-35 153.7 189 41.3
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 2.0e-35 153.3 199 41.2
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 2.0e-35 153.3 190 42.6
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 2.6e-35 152.9 202 42.6
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 3.4e-35 152.5 202 43.1
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 3.4e-35 152.5 190 40.5
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 5.8e-35 151.8 179 44.1
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 5.8e-35 151.8 199 41.7
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 5.8e-35 151.8 160 47.5
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 5.8e-35 151.8 199 41.2
Migut.E01381 Erythranthe guttata HOM05D002007 ORTHO05D005759 7.5e-35 151.4 201 45.3
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 7.5e-35 151.4 195 43.1
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 7.5e-35 151.4 199 40.7
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 9.8e-35 151.0 196 42.3
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 9.8e-35 151.0 189 40.7
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 1.3e-34 150.6 189 40.7
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 1.7e-34 150.2 190 40.0
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 2.2e-34 149.8 191 39.8
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 2.9e-34 149.4 199 40.7
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 2.9e-34 149.4 190 42.6
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 3.7e-34 149.1 163 46.6
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 3.7e-34 149.1 190 42.6
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 4.9e-34 148.7 191 39.3
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 1.1e-33 147.5 199 42.7
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 1.4e-33 147.1 192 43.2
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 1.4e-33 147.1 192 42.2
Medtr5g025760 Medicago truncatula HOM05D002007 ORTHO05D005759 1.8e-33 146.7 190 41.6
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 1.8e-33 146.7 190 42.1
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 2.4e-33 146.4 158 48.1
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 3.2e-33 146.0 191 38.2
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 3.2e-33 146.0 191 38.2
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 3.2e-33 146.0 201 40.8
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 3.2e-33 146.0 186 41.4
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 7.0e-33 144.8 171 45.0
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 7.0e-33 144.8 195 41.0
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 9.2e-33 144.4 190 41.1
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 1.2e-32 144.1 199 40.7
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 1.2e-32 144.1 185 40.0
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 1.2e-32 144.1 196 42.3
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 1.6e-32 143.7 190 44.7
Sabra01G0179300 Salix brachista HOM05D002007 ORTHO05D005759 1.6e-32 143.7 194 42.3
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 2.7e-32 142.9 201 41.3
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 3.5e-32 142.5 202 40.1
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 4.6e-32 142.1 190 40.0
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 1.0e-31 141.0 186 42.5
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 1.3e-31 140.6 186 39.8
Sabra03G0020400 Salix brachista HOM05D002007 ORTHO05D005759 1.7e-31 140.2 194 41.2
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 2.3e-31 139.8 186 39.2
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 3.0e-31 139.4 191 44.0
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 3.9e-31 139.0 190 41.6
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 3.9e-31 139.0 193 40.4
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 3.9e-31 139.0 201 37.3
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 8.6e-31 137.9 193 38.3
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 8.6e-31 137.9 190 41.1
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 1.1e-30 137.5 186 41.4
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 1.1e-30 137.5 201 41.8
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 1.1e-30 137.5 190 38.4
AL8G13480 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 1.5e-30 137.1 196 40.3
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 1.5e-30 137.1 201 40.8
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 1.5e-30 137.1 191 39.3
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 1.9e-30 136.7 191 39.8
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 1.9e-30 136.7 191 39.8
Duzib068G0709 Durio zibethinus HOM05D002007 ORTHO05D005759 1.9e-30 136.7 192 39.6
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.9e-30 136.7 190 41.1
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 2.5e-30 136.3 165 43.6
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 7.3e-30 134.8 186 38.7
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 9.5e-30 134.4 186 38.2
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 9.5e-30 134.4 186 38.2
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 9.5e-30 134.4 186 38.2
Sed0013162 Sechium edule HOM05D002007 ORTHO05D005759 1.2e-29 134.0 193 37.3
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 1.6e-29 133.7 186 38.2
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 2.1e-29 133.3 178 35.4
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 2.1e-29 133.3 193 36.8
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 2.1e-29 133.3 163 43.6
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 2.1e-29 133.3 178 43.8
ClCG11G016180 Citrullus lanatus HOM05D002007 ORTHO05D005759 2.8e-29 132.9 193 36.3
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 6.2e-29 131.7 186 40.3
Aa31LG9G7700 Aethionema arabicum HOM05D002007 ORTHO05D005759 1.1e-28 131.0 188 39.4
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 1.1e-28 131.0 163 41.1
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.1e-28 131.0 192 38.5
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 1.1e-28 131.0 190 39.5
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 1.1e-28 131.0 192 38.5
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 1.4e-28 130.6 186 38.7
unitig_0.g2832 Utricularia gibba HOM05D002007 ORTHO05D005759 1.8e-28 130.2 191 37.7
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 5.2e-28 128.6 170 41.2
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 5.2e-28 128.6 170 41.2
AL8G13540 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 6.8e-28 128.3 180 40.6
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 6.8e-28 128.3 178 38.8
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 8.9e-28 127.9 170 40.6
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 8.9e-28 127.9 170 40.6
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 1.2e-27 127.5 165 41.8
Lalb_Chr09g0325081 Lupinus albus HOM05D002007 ORTHO05D005759 1.2e-27 127.5 190 34.7
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 2.0e-27 126.7 160 41.9
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 2.0e-27 126.7 166 44.0
Sabra03G0020600 Salix brachista HOM05D002007 ORTHO05D005759 2.0e-27 126.7 191 39.8
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 5.8e-27 125.2 160 39.4
Gohir.A12G200900 Gossypium hirsutum HOM05D002007 ORTHO05D005759 5.8e-27 125.2 192 38.0
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 7.5e-27 124.8 186 38.7
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 2.9e-26 122.9 190 38.4
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 6.0e-24 115.2 187 35.3
Os08g0163600 Oryza sativa ssp. japonica HOM05D009720 ORTHO05D005759 5.2e-20 102.1 188 38.3
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 1.7e-18 97.1 118 41.5
MSTRG.25753 Avicennia marina HOM05D002007 ORTHO05D005759 2.2e-18 96.7 125 42.4
Zm00001eb227630 Zea mays HOM05D002007 ORTHO05D005759 2.4e-17 93.2 189 31.7
Zm00001eb153250 Zea mays HOM05D009720 ORTHO05D012012 7.1e-17 91.7 190 33.7
Os06g0710500 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D005759 2.1e-16 90.1 193 32.6
Zm00001eb415280 Zea mays HOM05D009720 ORTHO05D012012 6.0e-16 88.6 191 35.1
Zm00001eb198890 Zea mays HOM05D009720 ORTHO05D012012 3.3e-14 82.8 177 33.9
Zm00001eb373170 Zea mays HOM05D009720 ORTHO05D012012 3.3e-14 82.8 177 33.3
Zm00001eb343480 Zea mays HOM05D009720 ORTHO05D012012 4.3e-14 82.4 178 33.7
SEGI_25929 Sequoiadendron giganteum HOM05D002540 ORTHO05D002672 2.1e-13 80.1 195 26.7
Gohir.D05G290066 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.4e-12 77.4 103 40.8
Zm00001eb278080 Zea mays HOM05D009720 ORTHO05D012012 3.1e-12 76.3 191 33.0
Zm00001eb081960 Zea mays HOM05D009720 ORTHO05D012012 2.0e-11 73.6 152 34.2
Zm00001eb081970 Zea mays HOM05D009720 ORTHO05D012012 3.4e-11 72.8 152 34.2
Zm00001eb024860 Zea mays HOM05D009720 ORTHO05D012012 1.7e-10 70.5 174 33.9
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 3.8e-10 69.3 78 43.6
C02p18330 Brassica napus HOM05D002007 ORTHO05D005759 1.1e-09 67.8 107 35.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.1e-09 67.8 191 24.1
Sabra10G0020300 Salix brachista HOM05D002540 ORTHO05D002672 1.1e-09 67.8 197 24.4
Potri.010G049000 Populus trichocarpa HOM05D002540 ORTHO05D002672 4.1e-09 65.9 197 22.3
MD13G1103200 Malus domestica HOM05D002540 ORTHO05D002672 9.2e-09 64.7 191 25.1
AUR62005507 Chenopodium quinoa HOM05D002540 ORTHO05D002672 1.6e-08 63.9 191 24.6
MSTRG.7020 Avicennia marina HOM05D002540 ORTHO05D002672 2.1e-08 63.5 190 23.7
CiPaw.06G066300 Carya illinoinensis HOM05D002540 ORTHO05D002672 2.1e-08 63.5 191 24.1
Nn3g16668 Nelumbo nucifera HOM05D002540 ORTHO05D002672 3.5e-08 62.8 154 28.6
Zm00001eb076370 Zea mays HOM05D003600 ORTHO05D004129 4.6e-08 62.4 140 31.4
Zm00001eb055160 Zea mays HOM05D009720 ORTHO05D012012 6.0e-08 62.0 120 32.5
Hma1.2p1_0815F.1_g222730 Hydrangea macrophylla HOM05D002540 ORTHO05D002672 3.0e-07 59.7 153 24.8
CSS0045039 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 5.1e-07 58.9 183 23.0
Medtr5g096680 Medicago truncatula HOM05D002540 ORTHO05D002672 8.7e-07 58.2 184 23.9
MELO3C016214.2 Cucumis melo HOM05D002007 ORTHO05D005759 1.1e-06 57.8 78 38.5
Psat2g005760 Pisum sativum HOM05D002540 ORTHO05D002672 1.5e-06 57.4 177 22.0
Sp1g11600 Schrenkiella parvula HOM05D002540 ORTHO05D002672 1.5e-06 57.4 196 23.0
CARHR013380 Cardamine hirsuta HOM05D002540 ORTHO05D002672 2.5e-06 56.6 191 22.5
MBI10_g08627_MAGBIO Magnolia biondii HOM05D002540 ORTHO05D002672 4.3e-06 55.8 154 26.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 5.6e-06 55.5 155 23.2


User provided reference genes

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