Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 2.3e-309 1064.7 534 100.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.1e-189 667.2 543 65.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.5e-186 656.0 543 65.0
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.9e-182 642.5 543 63.0
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.2e-180 637.1 534 62.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.1e-180 636.3 536 64.2
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.0e-179 632.5 545 62.4
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.9e-178 629.8 539 61.4
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.1e-177 626.3 550 62.0
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 4.7e-177 625.2 547 62.0
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 5.2e-176 621.7 538 61.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 2.6e-175 619.4 544 59.9
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 5.8e-175 618.2 544 59.7
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.3e-174 617.1 541 60.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 3.8e-174 615.5 539 61.6
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 6.4e-174 614.8 551 61.7
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.9e-173 613.2 532 60.7
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.4e-173 612.8 543 60.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 7.1e-173 611.3 535 60.6
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 9.2e-173 610.9 542 60.5
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 2.7e-172 609.4 559 58.5
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.6e-172 608.6 547 60.1
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 7.8e-172 607.8 539 60.9
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.3e-171 606.3 552 60.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 6.6e-171 604.7 553 59.0
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.9e-170 603.2 524 61.3
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 4.3e-170 602.1 545 60.0
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.6e-170 601.7 535 59.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 9.6e-170 600.9 549 60.8
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 9.6e-170 600.9 556 60.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.7e-169 598.6 534 59.7
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.4e-168 597.0 537 60.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.8e-168 596.7 536 60.1
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.4e-168 596.3 547 58.5
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 6.9e-168 594.7 542 60.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 9.0e-168 594.3 542 59.2
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.6e-167 592.8 544 60.7
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.3e-166 590.5 534 59.0
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 6.4e-166 588.2 546 58.8
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 6.4e-166 588.2 546 58.8
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 8.4e-166 587.8 539 59.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 8.4e-166 587.8 529 60.3
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.4e-165 587.0 527 58.3
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.9e-165 586.6 548 56.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.9e-165 586.6 531 60.5
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.9e-165 586.6 545 59.8
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 3.2e-165 585.9 545 58.5
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.5e-164 582.4 531 60.3
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 4.6e-164 582.0 537 56.8
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.8e-164 581.3 539 59.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.3e-163 580.5 549 57.6
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 3.0e-163 579.3 557 57.1
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.0e-163 579.3 541 56.9
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.9e-163 578.9 554 56.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.6e-163 578.2 544 57.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 7.3e-162 574.7 539 58.3
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 3.6e-161 572.4 543 58.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 6.2e-161 571.6 552 55.8
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.1e-160 570.9 545 56.7
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-160 570.9 541 57.1
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.4e-160 570.5 544 56.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.0e-160 568.9 550 56.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.6e-159 566.2 552 55.3
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 7.6e-159 564.7 554 55.8
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.3e-158 563.9 549 55.4
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.7e-158 563.5 549 55.4
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.7e-158 563.5 551 57.7
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.4e-158 561.6 565 54.3
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 3.2e-157 559.3 548 56.9
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.6e-156 555.4 539 57.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.3e-155 553.9 475 64.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.8e-155 553.5 558 54.5
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.9e-155 552.4 545 56.3
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.5e-154 550.4 544 57.2
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.3e-154 549.3 558 56.3
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.3e-154 548.9 603 52.1
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 5.6e-154 548.5 541 56.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.4e-152 543.9 489 60.3
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.4e-152 543.9 556 56.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 4.0e-152 542.3 588 50.2
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 3.4e-151 539.3 548 54.9
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.3e-150 537.3 491 57.2
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.8e-150 535.8 526 53.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.1e-149 534.3 564 52.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.9e-149 533.5 468 58.3
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.4e-149 533.1 557 53.0
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.2e-149 532.7 539 57.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.2e-148 530.8 577 51.3
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.0e-148 528.5 571 52.5
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.0e-147 526.2 549 53.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.0e-147 526.2 554 54.0
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 3.0e-147 526.2 536 54.1
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 5.6e-146 521.9 620 50.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.6e-146 521.9 548 52.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 7.4e-146 521.5 489 59.1
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 9.6e-146 521.2 557 52.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 6.2e-145 518.5 552 52.5
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 7.6e-143 511.5 551 51.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.4e-141 507.3 548 53.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 5.5e-141 505.4 515 55.1
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.5e-141 505.4 483 55.3
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 9.3e-141 504.6 541 53.8
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.3e-138 495.7 542 52.2
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 2.2e-137 493.4 516 52.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.8e-137 492.3 553 48.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 4.8e-137 492.3 489 54.4
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 4.5e-135 485.7 529 51.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 4.5e-135 485.7 545 49.7
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.0e-134 484.6 557 49.2
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.2e-133 479.6 519 53.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.2e-133 479.2 530 50.8
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 7.9e-132 474.9 465 54.8
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 6.7e-131 471.9 491 54.2
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 6.9e-128 461.8 486 50.2
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.6e-124 450.7 448 53.6
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.5e-122 444.1 550 47.5
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.0e-122 443.7 553 48.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.8e-121 439.9 450 56.2
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 7.7e-119 431.8 458 54.4
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 5.0e-118 429.1 543 45.5
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-109 401.4 571 41.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-109 401.4 571 41.3
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.7e-107 392.1 525 42.9
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-106 390.6 531 42.7
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.8e-105 386.0 582 40.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.9e-101 374.0 551 42.3
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.4e-96 357.1 516 42.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.8e-91 340.9 321 58.6
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 2.0e-87 327.4 423 47.3
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 2.9e-86 323.6 310 58.1
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.7e-81 307.8 363 47.1
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 8.9e-75 285.4 700 32.0
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 9.2e-72 275.4 166 75.3
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-69 268.1 579 33.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.3e-69 266.5 647 32.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.1e-67 261.9 448 40.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.1e-67 260.4 166 71.7
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 4.3e-61 240.0 389 41.9
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 5.1e-54 216.5 183 62.8
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 5.3e-51 206.5 154 68.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.0e-46 192.2 205 44.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 9.3e-40 169.1 269 43.9
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.9e-39 166.0 161 57.8
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 8.7e-38 162.5 151 58.3
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.1e-36 156.0 148 59.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.4e-35 154.5 133 60.2
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.3e-33 148.7 98 66.3
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.9e-33 146.7 275 40.4
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.2e-32 143.7 136 55.9
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.6e-29 132.5 90 71.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 6.7e-22 109.8 166 34.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.9e-21 108.2 183 34.4
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.3e-17 95.5 102 46.1
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 5.0e-17 93.6 68 63.2
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.0e-17 93.6 96 55.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.0e-09 67.0 39 71.8
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 2.7e-07 61.2 117 36.8
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 6.1e-07 60.1 94 43.6


User provided reference genes

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