Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.8e-113 412.5 199 100.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-66 256.9 204 65.2
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.9e-47 192.6 163 57.7
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 8.5e-47 191.0 163 51.5
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 4.2e-46 188.7 165 53.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 4.2e-46 188.7 165 53.3
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 2.1e-45 186.4 164 54.9
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.1e-45 186.4 164 54.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 6.1e-45 184.9 165 52.1
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.0e-44 184.1 165 55.2
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.3e-44 183.0 164 52.4
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 4.0e-44 182.2 165 53.9
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 5.2e-44 181.8 165 52.7
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.7e-44 181.4 164 53.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 6.7e-44 181.4 164 52.4
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 1.5e-43 180.3 165 52.1
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.5e-43 180.3 164 51.8
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.6e-43 179.5 165 51.5
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 2.6e-43 179.5 164 51.8
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.6e-43 179.5 163 52.1
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 3.3e-43 179.1 165 50.3
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.4e-43 178.7 164 53.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 4.4e-43 178.7 165 52.7
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 4.4e-43 178.7 165 50.9
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 4.4e-43 178.7 164 50.6
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 7.5e-43 177.9 165 50.9
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 7.5e-43 177.9 165 49.1
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 9.7e-43 177.6 165 50.3
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.7e-43 177.6 165 52.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.3e-42 177.2 165 52.1
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.3e-42 177.2 160 51.9
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.7e-42 176.8 165 52.1
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.8e-42 176.0 165 48.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 6.3e-42 174.9 164 50.0
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 6.3e-42 174.9 165 50.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 6.3e-42 174.9 170 50.0
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 8.2e-42 174.5 165 50.3
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.1e-41 174.1 165 47.9
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.4e-41 173.7 165 49.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.4e-41 172.9 165 52.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.1e-41 172.6 165 52.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 4.1e-41 172.2 164 50.6
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 5.3e-41 171.8 164 51.2
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.6e-40 170.2 165 50.3
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.6e-40 170.2 165 47.9
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.0e-40 169.9 165 49.1
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 2.0e-40 169.9 165 49.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.0e-40 169.9 164 49.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-40 169.9 163 51.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-40 169.9 163 51.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.0e-40 169.9 163 51.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.7e-40 169.5 165 49.7
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.7e-40 169.5 164 48.8
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.9e-40 168.3 165 47.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 5.9e-40 168.3 165 49.7
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.9e-40 168.3 165 48.5
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 7.7e-40 167.9 165 49.7
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 7.7e-40 167.9 165 49.7
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.0e-39 167.5 165 47.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.0e-39 167.5 165 47.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.0e-39 167.5 172 48.8
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.3e-39 167.2 165 47.9
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.7e-39 166.8 165 47.3
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.2e-39 166.4 165 49.1
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.2e-39 166.4 164 48.2
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.2e-39 166.4 165 48.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.9e-39 166.0 165 47.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 6.5e-39 164.9 165 48.5
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 8.5e-39 164.5 165 50.3
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.1e-38 164.1 164 49.4
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.5e-38 163.7 165 52.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 3.2e-38 162.5 165 46.7
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 7.2e-38 161.4 165 50.3
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 7.2e-38 161.4 165 50.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 9.4e-38 161.0 165 47.9
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 9.4e-38 161.0 163 49.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.4e-38 161.0 165 46.7
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 9.4e-38 161.0 165 46.7
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 2.1e-37 159.8 165 49.7
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.1e-37 159.8 165 50.3
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.1e-37 159.8 165 46.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 2.1e-37 159.8 168 46.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.7e-37 159.5 165 50.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.6e-37 159.1 165 52.1
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.6e-37 159.1 165 50.3
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.6e-37 159.1 165 50.3
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 6.1e-37 158.3 164 48.2
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 8.0e-37 157.9 165 50.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.0e-36 157.5 178 44.4
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.4e-36 157.1 165 50.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.4e-36 157.1 187 44.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.4e-36 157.1 165 49.7
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.4e-36 157.1 169 47.3
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.3e-36 156.4 158 48.1
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.3e-36 156.4 165 50.3
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 3.0e-36 156.0 165 49.7
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.0e-36 155.6 187 44.4
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 5.2e-36 155.2 164 47.0
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.8e-36 154.5 165 43.6
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.0e-35 153.3 201 40.3
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.4e-35 152.5 168 43.5
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 9.8e-35 151.0 175 47.4
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 9.8e-35 151.0 162 47.5
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.3e-34 150.6 165 46.1
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.8e-34 149.4 135 52.6
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 4.8e-34 148.7 188 41.5
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.4e-33 147.1 166 45.2
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.2e-32 144.1 164 42.7
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 4.5e-32 142.1 164 47.0
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 2.9e-31 139.4 170 43.5
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.8e-31 139.0 173 39.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.1e-30 137.5 217 35.5
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.6e-29 132.5 148 46.6
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-28 129.8 149 45.6
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.3e-28 129.8 163 41.7
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 5.2e-28 128.6 132 49.2
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.2e-27 127.5 163 41.1
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.7e-27 125.2 176 38.6
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 2.8e-26 122.9 97 55.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.8e-26 122.9 133 45.9
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-26 122.5 132 46.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.7e-26 122.5 177 39.5
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.9e-26 122.1 126 47.6
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 6.3e-26 121.7 95 55.8
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 6.3e-26 121.7 95 55.8
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 9.2e-25 117.9 163 39.3
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-24 116.3 131 45.0
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 5.9e-24 115.2 153 40.5
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.3e-23 114.0 128 45.3
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 8.6e-23 111.3 127 44.1
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.5e-22 110.5 149 36.9
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.8e-20 103.6 96 51.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 3.0e-20 102.8 134 41.8
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.6e-19 99.8 116 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 3.2e-17 92.8 128 37.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 9.2e-17 91.3 89 49.4
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.0e-16 90.1 124 36.3
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 4.6e-16 89.0 97 46.4
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.3e-15 87.4 164 34.8
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.9e-15 85.9 99 43.4
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.5e-11 73.9 93 44.1
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 6.4e-10 68.6 166 35.5
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.4e-09 67.4 164 28.7
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.4e-09 65.5 73 41.1
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 4.6e-08 62.4 112 29.5
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.1e-06 57.8 37 67.6
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 5.6e-06 55.5 38 71.1


User provided reference genes

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