Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 0.0e+00 1260.4 673 100.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 6.0e-68 263.1 750 32.1
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 4.3e-66 256.9 772 32.3
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.7e-65 253.4 766 33.6
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 8.9e-64 249.2 765 32.5
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.0e-59 235.7 744 31.0
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 9.9e-55 219.2 745 30.9
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.5e-52 210.7 801 29.6
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.7e-51 208.4 758 28.5
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 3.9e-51 207.2 515 32.4
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.5e-50 205.3 750 31.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 4.0e-48 197.2 572 32.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 5.2e-48 196.8 742 30.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.6e-47 194.5 781 28.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 7.6e-47 193.0 756 28.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.6e-47 193.0 628 32.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.4e-45 188.7 540 32.0
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 7.1e-45 186.4 617 30.3
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.6e-44 183.7 702 30.3
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 7.3e-42 176.4 743 28.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.6e-41 175.3 417 36.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.1e-41 174.9 549 31.7
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.1e-41 174.9 737 30.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.2e-39 169.1 508 32.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 9.9e-39 166.0 539 32.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.9e-39 166.0 731 26.9
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.3e-38 165.6 726 28.7
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.7e-38 165.2 805 26.5
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.2e-38 164.9 685 27.3
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 8.4e-38 162.9 521 30.1
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 9.3e-37 159.5 752 28.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.2e-36 159.1 526 30.4
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.2e-36 159.1 611 29.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.6e-36 158.7 753 28.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.3e-35 154.8 769 28.7
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 8.7e-35 152.9 500 29.2
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.3e-34 151.0 460 29.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 3.3e-34 151.0 770 27.0
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 7.4e-34 149.8 446 31.6
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.6e-33 148.7 616 28.9
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.8e-32 145.2 443 33.0
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.1e-32 144.4 725 25.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.1e-32 144.4 264 39.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 6.9e-32 143.3 729 27.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-31 142.5 737 25.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.5e-31 140.6 443 29.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 8.4e-30 136.3 235 39.6
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.1e-29 136.0 592 27.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.4e-29 135.6 362 32.3
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.2e-29 134.4 152 52.0
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.2e-29 134.4 480 28.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.2e-29 134.0 716 25.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 4.2e-29 134.0 742 25.6
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 9.3e-29 132.9 262 34.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.6e-28 132.1 391 34.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.1e-28 131.7 745 24.6
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.0e-27 129.4 785 26.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.1e-27 127.1 431 29.0
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.1e-26 125.9 736 25.7
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-26 125.9 503 27.6
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.5e-26 125.6 261 36.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.5e-26 124.8 347 30.5
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.6e-25 122.1 764 25.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.1e-25 121.7 513 27.7
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 2.8e-25 121.3 823 25.6
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-24 119.4 489 27.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.4e-24 119.0 269 33.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.4e-24 119.0 673 25.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.8e-24 118.6 274 31.8
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.8e-24 118.6 259 34.0
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.8e-24 118.6 599 25.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.6e-23 114.8 443 28.9
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 7.6e-23 113.2 465 29.9
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 7.6e-23 113.2 628 26.9
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.9e-22 111.3 490 27.8
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.9e-22 110.5 276 31.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 4.9e-22 110.5 565 27.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.9e-22 110.5 481 27.2
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 6.5e-22 110.2 522 26.1
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-21 109.4 379 30.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.4e-21 109.0 364 29.9
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-21 108.6 160 41.9
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.9e-21 108.6 230 33.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.5e-21 108.2 518 26.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.2e-21 107.5 468 28.4
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 5.5e-21 107.1 150 40.7
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.6e-20 105.5 282 29.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-20 105.1 201 35.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 6.0e-20 103.6 771 24.3
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.8e-19 102.1 281 29.5
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.3e-19 101.7 174 37.9
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.9e-19 100.9 490 26.3
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.7e-19 100.1 220 33.6
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 8.7e-19 99.8 273 31.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-18 99.4 513 26.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.5e-18 99.0 185 34.1
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 4.3e-18 97.4 239 31.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 5.7e-18 97.1 597 26.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 7.4e-18 96.7 175 36.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 7.4e-18 96.7 175 36.6
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 9.6e-18 96.3 373 28.2
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-17 95.9 222 32.9
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-17 95.9 280 29.3
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.6e-17 95.5 162 35.8
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.7e-17 94.4 264 27.3
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.8e-17 94.0 464 27.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 4.8e-17 94.0 462 31.0
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.4e-16 91.7 296 30.4
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.4e-16 91.7 212 31.1
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 9.0e-16 89.7 376 27.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.0e-15 88.6 727 26.1
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.7e-14 85.5 185 29.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.7e-14 85.5 275 29.8
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.2e-14 85.1 646 24.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.9e-14 84.7 454 25.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.5e-14 83.6 272 29.4
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 8.5e-14 83.2 136 37.5
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-13 82.0 164 34.1
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.9e-13 82.0 164 34.1
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.5e-13 81.6 708 22.5
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 9.3e-13 79.7 225 29.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.6e-12 79.0 243 31.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.3e-11 75.9 146 34.9
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.3e-11 75.1 293 29.7
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.3e-11 75.1 93 39.8
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 8.7e-11 73.2 743 23.1
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 8.7e-11 73.2 356 25.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-10 72.8 153 34.6
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-09 68.9 504 24.8
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 8.2e-09 66.6 564 25.0
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.9e-08 63.5 470 25.5
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.5e-07 62.4 52 50.0
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.0e-07 62.0 185 28.1
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 5.9e-07 60.5 217 25.3
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 7.7e-07 60.1 95 37.9
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.0e-06 59.7 54 42.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.3e-06 59.3 52 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.3e-06 59.3 52 51.9
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 8.5e-06 56.6 59 44.1
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 8.5e-06 56.6 544 23.2


User provided reference genes

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