Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004281 Daucus carota HOM05D002388 ORTHO05D008833 1.9e-37 158.7 81 100.0
Prupe.5G029600 Prunus persica HOM05D002388 ORTHO05D008833 2.8e-33 144.8 81 88.9
THA.LOC104804589 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 3.7e-33 144.4 81 91.4
MD16G1280900 Malus domestica HOM05D002388 ORTHO05D008833 4.9e-33 144.1 81 87.7
Haze_08171 Corylus avellana HOM05D002388 ORTHO05D008833 6.3e-33 143.7 81 90.1
MD06G1025500 Malus domestica HOM05D002388 ORTHO05D008833 8.3e-33 143.3 81 87.7
arahy.Tifrunner.gnm1.ann1.Y11EX9 Arachis hypogaea HOM05D002388 ORTHO05D008833 1.4e-32 142.5 81 90.1
PGR031G2620 Punica granatum HOM05D002388 ORTHO05D008833 1.8e-32 142.1 79 89.9
Glyma.10G041600 Glycine max HOM05D002388 ORTHO05D008833 2.4e-32 141.7 81 91.4
QL12p001301 Quercus lobata HOM05D002388 ORTHO05D008833 2.4e-32 141.7 80 86.2
CiPaw.11G097500 Carya illinoinensis HOM05D002388 ORTHO05D008833 3.1e-32 141.4 81 86.4
Medtr8g066600 Medicago truncatula HOM05D002388 ORTHO05D008833 4.1e-32 141.0 81 90.1
TPR.G3364 Trifolium pratense HOM05D002388 ORTHO05D008833 4.1e-32 141.0 81 90.1
Lj1g0006191 Lotus japonicus HOM05D002388 ORTHO05D008833 5.4e-32 140.6 81 90.1
Actinidia14785 Actinidia chinensis HOM05D002388 ORTHO05D008833 9.2e-32 139.8 81 88.9
Psat4g122960 Pisum sativum HOM05D002388 ORTHO05D008833 9.2e-32 139.8 81 90.1
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 9.2e-32 139.8 81 85.2
TAR375G0363 Trochodendron aralioides HOM05D002388 ORTHO05D008833 9.2e-32 139.8 81 84.0
Glyma.13G128600 Glycine max HOM05D002388 ORTHO05D008833 1.2e-31 139.4 81 88.9
Hma1.2p1_0870F.1_g230830 Hydrangea macrophylla HOM05D002388 ORTHO05D008833 1.2e-31 139.4 80 91.2
Manes.04G058600 Manihot esculenta HOM05D002388 ORTHO05D008833 1.2e-31 139.4 79 88.6
TWI60G0513 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 1.6e-31 139.0 81 85.2
TWI81G0136 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 1.6e-31 139.0 81 84.0
Ciclev10003014m.g Citrus clementina HOM05D002388 ORTHO05D008833 2.0e-31 138.7 81 86.4
FAN18G1485 Fragaria x ananassa HOM05D002388 ORTHO05D008833 2.0e-31 138.7 81 86.4
Potri.001G138100 Populus trichocarpa HOM05D002388 ORTHO05D008833 2.0e-31 138.7 81 84.0
Dinv28991 Davidia involucrata HOM05D002388 ORTHO05D008833 2.7e-31 138.3 81 87.7
Eucgr.D02219 Eucalyptus grandis HOM05D002388 ORTHO05D008833 2.7e-31 138.3 81 86.4
FAN04G1000 Fragaria x ananassa HOM05D002388 ORTHO05D008833 3.5e-31 137.9 81 84.0
RcHm_v2.0_Chr7g0211611 Rosa chinensis HOM05D002388 ORTHO05D008833 3.5e-31 137.9 81 85.2
CiPaw.12G067300 Carya illinoinensis HOM05D002388 ORTHO05D008833 5.9e-31 137.1 81 84.0
FAN08G0310 Fragaria x ananassa HOM05D002388 ORTHO05D008833 5.9e-31 137.1 81 84.0
Nn3g19407 Nelumbo nucifera HOM05D002388 ORTHO05D008833 5.9e-31 137.1 81 85.2
GSVIVG01013070001 Vitis vinifera HOM05D002388 ORTHO05D008833 5.9e-31 137.1 78 85.9
Medtr2g014320 Medicago truncatula HOM05D002388 ORTHO05D008833 7.8e-31 136.7 78 89.7
vmacro14193 Vaccinium macrocarpon HOM05D002388 ORTHO05D008833 7.8e-31 136.7 81 85.2
Aa31LG4G4590 Aethionema arabicum HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
A02p19260 Brassica napus HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
BolC2t09212H Brassica oleracea HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
BraA07t31559Z Brassica rapa HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
Thhalv10019650m.g Eutrema salsugineum HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
Thecc.03G308600 Theobroma cacao HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 85.2
BraA02t06971Z Brassica rapa HOM05D002388 ORTHO05D008833 1.7e-30 135.6 81 86.4
Carub.0002s2112 Capsella rubella HOM05D002388 ORTHO05D008833 1.7e-30 135.6 81 85.2
SalBow6G3465 Salvia bowleyana HOM05D002388 ORTHO05D008833 1.7e-30 135.6 81 86.4
CARHR067600 Cardamine hirsuta HOM05D002388 ORTHO05D008833 2.3e-30 135.2 81 86.4
Cc08_g03400 Coffea canephora HOM05D002388 ORTHO05D008833 2.3e-30 135.2 81 85.2
PSO384G4479 Papaver somniferum HOM05D002388 ORTHO05D008833 2.9e-30 134.8 81 82.7
Cpa.g.sc13.304 Carica papaya HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 85.2
SGA_v2.0_scaffold20G09240 Striga asiatica HOM05D002388 ORTHO05D008833 3.8e-30 134.4 80 83.8
Duzib205G0142 Durio zibethinus HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 85.2
Duzib068G0043 Durio zibethinus HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 85.2
BcaC08g46864 Brassica carinata HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 85.2
BolC6t39879H Brassica oleracea HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 85.2
PSO339G0280 Papaver somniferum HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 81.5
AL2G34200 Arabidopsis lyrata HOM05D003614 ORTHO05D004156 1.1e-29 132.9 81 82.7
AT1G74340 Arabidopsis thaliana HOM05D002388 ORTHO05D008833 1.1e-29 132.9 81 82.7
Sp5g29500 Schrenkiella parvula HOM05D002388 ORTHO05D008833 1.1e-29 132.9 81 84.0
Ah.12g055420 Amaranthus hybridus HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 82.7
EL10Ac5g12027 Beta vulgaris HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 82.7
CSS0033524 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.9e-29 132.1 81 81.5
CSS0026703 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 81.5
Gohir.D08G175050 Gossypium hirsutum HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 84.0
Gorai.004G182800 Gossypium raimondii HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 84.0
Lalb_Chr05g0225791 Lupinus albus HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 86.4
Migut.A01083 Erythranthe guttata HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 81.5
HanXRQChr17g0538091 Helianthus annuus HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 80.2
TAR119G0002 Trochodendron aralioides HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 80.2
AUR62018655 Chenopodium quinoa HOM05D002388 ORTHO05D008833 4.3e-29 131.0 81 84.0
CDE05G0657 Ceratophyllum demersum HOM05D002388 ORTHO05D008833 7.3e-29 130.2 80 80.0
Nitab4.5_0000556g0150 Nicotiana tabacum HOM05D002388 ORTHO05D008833 7.3e-29 130.2 81 81.5
AUR62007344 Chenopodium quinoa HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 84.0
Peaxi162Scf00185g00821 Petunia axillaris HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Nitab4.5_0002778g0070 Nicotiana tabacum HOM05D002388 ORTHO05D008833 1.2e-28 129.4 80 82.5
CAN.G137.4 Capsicum annuum HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 80.2
MELO3C013830.2 Cucumis melo HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 82.7
CsaV3_3G001440 Cucumis sativus L. HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 81.5
ECA246G0855 Erigeron canadensis HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 79.0
Peaxi162Scf00045g00216 Petunia axillaris HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 80.2
unitig_32.g10897 Utricularia gibba HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 81.5
COL.COLO4_16958 Corchorus olitorius HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 82.7
Phvul.003G283500 Phaseolus vulgaris HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 81.5
Sed0013912 Sechium edule HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 81.5
CANSAT21G0073 Cannabis sativa HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 82.7
Solyc08g005210.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 80.2
Sopen08g001240 Solanum pennellii HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 80.2
CSS0009097 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 6.1e-28 127.1 80 80.0
CAN.G474.16 Capsicum annuum HOM05D002388 ORTHO05D008833 1.0e-27 126.3 81 80.2
Lsat_1_v5_gn_3_19620 Lactuca sativa HOM05D002388 ORTHO05D008833 1.4e-27 125.9 83 75.9
CSS0006499 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 2.3e-27 125.2 80 80.0
Os11g0311550 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 2.3e-27 125.2 79 78.5
PGSC0003DMG400003487 Solanum tuberosum HOM05D002388 ORTHO05D008833 4.0e-27 124.4 81 79.0
Nitab4.5_0001632g0030 Nicotiana tabacum HOM05D002388 ORTHO05D008833 5.2e-27 124.0 81 79.0
Peaxi162Scf00038g00010 Petunia axillaris HOM05D002388 ORTHO05D008833 5.2e-27 124.0 79 78.5
Solyc06g066400.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 8.9e-27 123.2 81 77.8
Sopen06g021590 Solanum pennellii HOM05D002388 ORTHO05D008833 8.9e-27 123.2 81 77.8
ATR0564G363 Amborella trichopoda HOM05D002388 ORTHO05D008833 1.5e-26 122.5 81 74.1
Nitab4.5_0000109g0080 Nicotiana tabacum HOM05D002388 ORTHO05D008833 1.5e-26 122.5 81 77.8
PGSC0003DMG400016784 Solanum tuberosum HOM05D002388 ORTHO05D008833 2.6e-26 121.7 81 76.5
THA.LOC104808763 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 4.1e-24 114.4 76 76.3
SEGI_36022 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 7.8e-23 110.2 81 64.2
Nn1g00187 Nelumbo nucifera HOM05D002388 ORTHO05D008833 2.5e-21 105.1 57 91.2
Mapoly0067s0029 Marchantia polymorpha HOM05D002388 ORTHO05D008833 3.3e-21 104.8 80 63.8
PGSC0003DMG400043827 Solanum tuberosum HOM05D002388 ORTHO05D008833 3.1e-19 98.2 81 66.7
CSS0023919 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 6.8e-19 97.1 78 70.5
AagrBONN_evm.TU.Sc2ySwM_228.4391 Anthoceros agrestis HOM05D003123 ORTHO05D003492 8.9e-19 96.7 76 57.9
Pp3c22_2990 Physcomitrium patens HOM05D002388 ORTHO05D008833 5.8e-18 94.0 80 57.5
arahy.Tifrunner.gnm1.ann1.G961TR Arachis hypogaea HOM05D002388 ORTHO05D008833 1.4e-16 89.4 82 63.4
SEGI_14802 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 9.2e-16 86.7 64 65.6
Hund14364 Selenicereus undatus HOM05D002388 ORTHO05D008833 2.7e-15 85.1 51 84.3
BcaB05g24849 Brassica carinata HOM05D002388 ORTHO05D008833 4.6e-15 84.3 50 82.0
ClCG10G001370 Citrullus lanatus HOM05D002388 ORTHO05D008833 4.6e-15 84.3 53 79.2
Os02g0140101 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 6.0e-15 84.0 49 83.7
PGSC0003DMG400016734 Solanum tuberosum HOM05D002388 ORTHO05D008833 8.6e-14 80.1 55 76.4
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 4.1e-08 61.2 39 66.7
MCO11G506 Micromonas commoda HOM05D002388 ORTHO05D008833 1.7e-06 55.8 68 36.8


User provided reference genes

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