Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.1e-50 203.0 104 100.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.2e-39 166.4 100 81.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.4e-24 116.3 94 66.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 6.9e-24 114.0 96 65.6
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.6e-23 112.1 97 58.8
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.4e-23 111.7 96 61.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.5e-23 111.3 98 61.2
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.8e-23 110.9 97 57.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.6e-23 110.5 95 50.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.3e-22 109.8 96 60.4
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-22 109.8 96 60.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.0e-22 107.8 97 56.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-21 105.9 96 58.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.9e-21 105.9 101 63.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.2e-21 104.8 98 56.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.2e-21 104.0 97 54.6
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.3e-21 103.6 90 57.8
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.3e-21 103.6 101 59.4
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.2e-20 103.2 93 57.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.2e-20 103.2 102 58.8
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.7e-20 102.1 99 47.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 2.7e-20 102.1 97 56.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.5e-20 101.7 100 55.0
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.5e-20 101.7 100 55.0
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.6e-20 101.3 100 56.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.6e-20 101.3 97 53.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.1e-20 100.9 83 53.0
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.0e-19 100.1 97 55.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.0e-19 100.1 95 58.9
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.8e-19 99.4 96 55.2
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.3e-19 99.0 102 58.8
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 3.9e-19 98.2 103 57.3
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.9e-19 98.2 99 52.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 6.7e-19 97.4 96 56.2
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.7e-19 97.4 83 54.2
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.1e-18 96.7 100 54.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.5e-18 96.3 102 52.9
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.5e-18 96.3 97 59.8
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.5e-18 96.3 95 52.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.9e-18 95.9 97 53.6
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.5e-18 95.5 94 56.4
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-18 95.1 89 53.9
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.3e-18 95.1 96 55.2
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-18 94.4 93 52.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.7e-18 94.4 93 52.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 5.7e-18 94.4 88 50.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 5.7e-18 94.4 88 50.0
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.4e-18 94.0 101 51.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.7e-18 93.6 94 56.4
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 9.7e-18 93.6 94 55.3
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-17 93.2 93 52.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-17 92.8 99 47.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.8e-17 92.0 101 49.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-17 92.0 103 49.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.8e-17 92.0 97 52.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.7e-17 91.7 101 50.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.7e-17 91.7 96 52.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.8e-17 91.3 101 50.5
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 6.3e-17 90.9 97 52.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.3e-17 90.9 94 54.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 6.3e-17 90.9 97 51.5
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 6.3e-17 90.9 97 49.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.1e-16 90.1 96 57.3
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-16 90.1 85 49.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-16 89.7 101 51.5
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-16 89.7 101 51.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.8e-16 89.4 95 52.6
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.8e-16 89.4 99 50.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-16 89.4 93 52.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-16 89.4 93 52.7
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 3.1e-16 88.6 95 51.6
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.1e-16 88.2 95 49.5
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.1e-16 88.2 101 50.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 4.1e-16 88.2 89 49.4
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 6.9e-16 87.4 90 45.6
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.0e-16 87.0 103 45.6
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.5e-15 86.3 99 52.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-15 86.3 100 46.0
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-15 85.9 95 47.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 4.5e-15 84.7 94 48.9
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.7e-15 84.0 76 57.9
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 7.7e-15 84.0 94 47.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.3e-14 83.2 97 48.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.2e-14 82.4 89 47.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.0e-14 81.3 85 48.2
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.5e-14 80.9 95 43.2
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 6.5e-14 80.9 93 43.0
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.5e-14 80.9 98 48.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.5e-14 80.5 95 45.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 8.5e-14 80.5 98 48.0
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.5e-14 80.5 94 40.4
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.1e-13 80.1 101 42.6
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.4e-13 79.7 100 42.0
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.9e-13 79.3 96 43.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.5e-13 79.0 92 46.7
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 9.4e-13 77.0 83 49.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 9.4e-13 77.0 95 46.3
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.7e-12 75.5 95 43.2
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.7e-12 75.5 96 47.9
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.6e-12 75.1 80 51.2
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 4.6e-12 74.7 101 44.6
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.8e-11 72.8 82 50.0
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 3.9e-11 71.6 87 44.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.1e-10 70.1 96 42.7
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 3.3e-10 68.6 98 43.9
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 3.3e-10 68.6 91 46.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.3e-10 68.6 100 44.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 4.3e-10 68.2 98 42.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 4.3e-10 68.2 98 42.9
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.7e-10 67.8 101 43.6
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 5.7e-10 67.8 90 44.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 7.4e-10 67.4 101 43.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 9.7e-10 67.0 96 40.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-10 67.0 90 44.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 9.7e-10 67.0 90 44.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 9.7e-10 67.0 100 46.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.3e-09 66.6 101 40.6
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.2e-09 65.9 97 42.3
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.2e-09 65.9 96 39.6
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.8e-09 65.5 96 40.6
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 4.8e-09 64.7 74 50.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 4.8e-09 64.7 97 41.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 4.8e-09 64.7 97 41.2
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 8.2e-09 63.9 90 43.3
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.4e-08 63.2 102 41.2
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-08 62.4 98 41.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-08 62.0 98 41.8
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 4.1e-08 61.6 86 45.3
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 6.9e-08 60.8 90 42.2
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.5e-07 59.7 78 46.2
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.5e-07 59.7 78 46.2
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.5e-07 59.7 78 46.2
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.5e-07 59.7 77 48.1
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.0e-07 59.3 96 40.6
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.6e-07 58.9 96 39.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.6e-07 58.9 67 49.3
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.4e-07 58.5 67 52.2
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.4e-07 58.5 67 52.2
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 4.5e-07 58.2 73 45.2
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 4.5e-07 58.2 78 44.9
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.9e-07 57.8 75 41.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-06 57.0 77 42.9
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.3e-06 56.6 66 47.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.7e-06 56.2 67 53.7
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.7e-06 56.2 77 45.5
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.7e-06 56.2 77 45.5
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.7e-06 56.2 77 45.5
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.7e-06 56.2 73 43.8
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.7e-06 56.2 77 41.6
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-06 55.8 77 45.5
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-06 55.8 102 38.2
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-06 55.8 66 51.5
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 2.2e-06 55.8 66 51.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 2.2e-06 55.8 70 45.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.9e-06 55.5 70 42.9
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.9e-06 55.5 67 53.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.9e-06 55.5 66 50.0
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.9e-06 55.5 66 50.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.5e-06 54.3 66 47.0
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 6.5e-06 54.3 102 38.2
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 8.5e-06 53.9 76 39.5
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 8.5e-06 53.9 95 35.8


User provided reference genes

Program Settings