Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.2e-66 254.6 132 100.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.5e-31 139.0 139 62.6
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.4e-21 105.9 139 54.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.5e-18 95.9 130 51.5
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.2e-18 95.1 133 53.4
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.6e-17 93.2 140 51.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.7e-17 91.7 145 48.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.0e-17 90.9 145 49.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.4e-16 90.1 144 47.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.8e-16 89.7 133 49.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.8e-16 89.7 127 50.4
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.3e-16 89.4 123 52.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.9e-16 88.6 132 51.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.9e-16 88.6 127 49.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.1e-15 87.0 118 52.5
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.1e-15 87.0 135 45.9
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.1e-15 87.0 142 45.1
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.5e-15 86.7 142 49.3
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.0e-15 86.3 145 49.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.6e-15 85.9 136 50.0
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.7e-15 84.7 133 50.4
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.7e-15 84.0 141 49.6
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-14 83.6 119 48.7
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.3e-14 83.6 147 47.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.7e-14 83.2 119 48.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.2e-14 82.8 135 45.2
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.2e-14 82.8 128 48.4
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.8e-14 82.4 130 44.6
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.3e-14 81.3 138 49.3
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 6.3e-14 81.3 134 50.0
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 8.2e-14 80.9 127 47.2
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.1e-13 80.5 136 46.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.4e-13 80.1 125 45.6
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.4e-13 80.1 111 48.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.4e-13 80.1 133 49.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.8e-13 79.7 144 47.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.1e-13 79.0 125 47.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.1e-13 78.6 127 51.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.3e-13 78.2 129 50.4
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 5.3e-13 78.2 127 51.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 5.3e-13 78.2 133 47.4
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 5.3e-13 78.2 136 44.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.0e-13 77.8 123 46.3
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 9.1e-13 77.4 120 45.8
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.1e-13 77.4 127 44.9
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-12 77.0 120 49.2
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.6e-12 76.6 130 48.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.6e-12 75.9 144 46.5
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 2.6e-12 75.9 123 48.8
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.6e-12 75.9 136 42.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.5e-12 75.5 125 40.8
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 4.5e-12 75.1 118 45.8
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.0e-11 73.9 137 46.0
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.2e-11 72.8 118 47.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.2e-11 72.8 132 43.9
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.9e-11 72.4 120 43.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.8e-11 72.0 132 40.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 5.0e-11 71.6 110 50.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.0e-11 71.6 132 44.7
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 5.0e-11 71.6 129 46.5
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.5e-11 70.9 94 51.1
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-10 70.5 119 42.9
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-10 70.1 124 45.2
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.5e-10 70.1 141 43.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.5e-10 70.1 124 45.2
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.5e-10 70.1 125 44.8
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-10 69.7 132 40.2
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.5e-10 69.3 132 47.0
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-10 69.3 123 45.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.2e-10 68.9 123 43.9
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.2e-10 68.6 147 46.9
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.2e-10 68.6 123 44.7
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 5.5e-10 68.2 126 47.6
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.5e-10 68.2 129 44.2
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 5.5e-10 68.2 137 40.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 7.2e-10 67.8 126 42.9
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 9.4e-10 67.4 134 40.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.2e-09 67.0 146 41.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.6e-09 66.6 71 54.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.1e-09 66.2 143 43.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.7e-09 65.1 121 46.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.7e-09 65.1 129 46.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.1e-09 64.7 120 45.0
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 6.1e-09 64.7 130 43.8
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 8.0e-09 64.3 124 42.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-08 63.9 120 46.7
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.0e-08 63.9 134 41.0
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.8e-08 63.2 61 63.9
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-08 63.2 139 37.4
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.3e-08 62.8 118 44.1
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 5.2e-08 61.6 145 42.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.2e-08 61.6 140 41.4
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 5.2e-08 61.6 155 38.7
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.2e-08 61.6 135 42.2
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.7e-08 61.2 132 41.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.7e-08 61.2 128 42.2
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.2e-07 60.5 114 43.9
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-07 60.5 119 45.4
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.2e-07 60.5 139 34.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-07 60.5 38 76.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.5e-07 60.1 132 44.7
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.5e-07 60.1 129 39.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 2.0e-07 59.7 127 39.4
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 2.0e-07 59.7 147 40.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-07 59.7 146 35.6
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.0e-07 59.7 160 38.1
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.0e-07 59.7 80 47.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.0e-07 59.7 133 44.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.6e-07 59.3 142 40.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.6e-07 59.3 83 47.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.3e-07 58.9 121 45.5
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 5.7e-07 58.2 146 35.6
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.7e-07 58.2 143 40.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 5.7e-07 58.2 146 35.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 5.7e-07 58.2 136 36.8
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 7.5e-07 57.8 145 35.2
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.3e-06 57.0 50 66.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.3e-06 57.0 118 39.8
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-06 56.6 144 38.9
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 1.7e-06 56.6 116 38.8
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.2e-06 56.2 144 37.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.2e-06 56.2 144 37.5
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.8e-06 55.8 142 40.8
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 2.8e-06 55.8 144 37.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.8e-06 55.8 117 42.7
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 3.7e-06 55.5 57 54.4
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 4.8e-06 55.1 144 37.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 6.3e-06 54.7 145 40.7
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.2e-06 54.3 111 45.0


User provided reference genes

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