Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.5e-175 618.6 305 100.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 6.1e-153 544.3 307 86.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 84.9
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 86.9
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 8.8e-152 540.4 305 84.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 85.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 84.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 83.9
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 83.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 83.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 82.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 83.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 83.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 83.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 82.6
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 82.3
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.3e-147 526.6 326 80.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 81.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 82.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 82.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 81.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 82.0
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 82.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 80.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 80.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 80.7
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 80.7
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 81.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 81.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 81.0
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 81.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 7.9e-145 517.3 304 81.2
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 81.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.6
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.6
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 81.0
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 80.3
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.2e-144 514.6 302 80.5
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 81.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 81.0
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 81.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 81.3
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 80.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 80.7
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 80.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 80.7
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 80.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 80.7
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 80.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 81.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 79.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 80.7
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 80.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 81.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 79.3
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 81.0
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 80.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 80.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.3e-142 510.0 308 81.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 80.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.2e-142 507.3 330 74.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 80.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 79.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.1e-141 506.9 301 81.7
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 79.7
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 80.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 79.3
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 80.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.5e-140 501.9 300 80.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 4.5e-140 501.5 305 79.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.9e-140 501.1 305 78.4
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 7.7e-140 500.7 305 78.4
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 79.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.1e-138 496.9 303 78.9
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 5.5e-138 494.6 302 79.1
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 9.4e-138 493.8 301 79.7
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 9.4e-138 493.8 372 66.9
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.8e-136 489.6 307 77.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.3e-136 489.2 307 77.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 5.2e-136 488.0 305 78.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.2e-135 486.9 303 75.9
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.7e-135 484.6 307 76.2
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 77.4
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.7e-134 481.9 307 75.9
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 76.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 76.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 76.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.8e-133 479.6 304 76.3
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.1e-133 478.4 305 76.1
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 75.4
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 3.5e-132 475.3 306 75.5
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.7e-132 474.2 307 74.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 7.7e-132 474.2 307 74.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 76.1
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 8.8e-128 460.7 388 61.9
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 8.8e-128 460.7 303 72.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.8e-125 453.0 304 71.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.8e-125 453.0 304 71.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 9.1e-125 450.7 304 71.1
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 4.5e-124 448.4 305 71.5
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.3e-123 446.8 304 70.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.2e-120 434.9 304 68.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.4e-119 431.8 304 68.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.6e-116 423.3 306 66.3
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.0e-115 420.6 300 68.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 2.5e-114 416.0 305 68.5
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-109 400.6 261 75.5
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 4.6e-108 395.2 303 64.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.0e-104 384.0 235 78.7
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.2e-102 376.3 303 60.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.4e-101 372.9 225 79.6
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 5.4e-101 371.7 225 81.8
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.6e-97 359.0 309 58.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.1e-89 331.3 228 73.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 2.0e-87 326.6 210 73.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 4.0e-72 275.8 186 74.7
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 7.9e-68 261.5 181 71.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.0e-67 261.2 149 83.9
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.0e-67 259.6 144 86.1
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.8e-57 225.7 153 70.6
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.7e-54 217.2 154 68.2
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.2e-54 216.9 299 46.5
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.0e-38 164.9 136 56.6
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.1e-37 161.4 80 88.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.4e-37 161.0 80 90.0
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-37 160.2 204 48.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.2e-37 159.8 299 35.1
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.6e-36 157.5 305 37.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.7e-36 156.8 125 59.2
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 2.7e-36 156.8 83 83.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.3e-35 153.7 79 84.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.9e-35 152.9 85 81.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.6e-26 123.6 102 59.8
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.8e-24 117.5 76 69.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.0e-22 111.7 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-21 106.3 64 76.6
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.6e-20 104.4 60 80.0
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.3e-18 96.7 295 29.2
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.9e-15 85.9 73 64.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.4e-11 74.7 236 27.5


User provided reference genes

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