Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-34 148.3 94 100.0
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-21 106.3 60 73.3
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-21 105.1 59 72.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-21 105.1 59 71.2
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-18 95.9 54 72.2
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.3e-17 91.7 57 63.2
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 9.7e-17 90.1 60 66.7
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 9.7e-17 90.1 54 66.7
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.8e-16 88.6 52 65.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.8e-16 88.6 54 66.7
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.8e-16 87.8 58 60.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.3e-16 87.4 52 71.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.2e-16 87.0 53 64.2
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 53 64.2
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 54 64.8
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 58 58.6
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-15 85.9 60 63.3
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-15 85.9 60 63.3
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 4.1e-15 84.7 53 64.2
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 5.3e-15 84.3 52 67.3
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.9e-15 84.0 53 60.4
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 9.0e-15 83.6 55 58.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 9.0e-15 83.6 53 62.3
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-14 83.2 57 56.1
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.2e-14 83.2 57 56.1
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-14 83.2 54 59.3
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-14 83.2 54 59.3
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-14 83.2 49 67.3
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.2e-14 83.2 52 61.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.5e-14 82.8 57 59.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.5e-14 82.8 57 56.1
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-14 82.8 53 64.2
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-14 82.8 49 67.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.0e-14 82.4 58 58.6
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-14 82.4 49 63.3
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-14 82.4 57 56.1
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 2.0e-14 82.4 50 62.0
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.6e-14 82.0 58 60.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-14 82.0 49 63.3
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 4.5e-14 81.3 53 56.6
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 4.5e-14 81.3 58 53.4
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 4.5e-14 81.3 52 63.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.9e-14 80.9 58 55.2
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.9e-14 80.9 55 58.2
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.7e-14 80.5 59 57.6
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 7.7e-14 80.5 59 52.5
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.7e-14 80.5 52 59.6
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.0e-13 80.1 57 52.6
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.3e-13 79.7 57 59.6
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-13 79.3 56 51.8
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-13 79.3 49 59.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.2e-13 79.0 54 55.6
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.8e-13 78.2 55 54.5
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.8e-13 78.2 51 60.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-13 77.8 51 62.7
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 6.5e-13 77.4 47 61.7
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 6.5e-13 77.4 47 61.7
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 6.5e-13 77.4 51 60.8
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.1e-12 76.6 57 50.9
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.4e-12 76.3 47 61.7
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.9e-12 75.9 58 51.7
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-12 75.9 47 61.7
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-12 75.9 47 61.7
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.9e-12 75.9 47 59.6
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-12 75.9 49 57.1
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-12 75.9 49 57.1
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-12 75.5 51 54.9
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-12 75.5 57 52.6
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-12 75.5 57 52.6
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-12 75.1 52 55.8
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.2e-12 75.1 50 58.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 5.5e-12 74.3 56 55.4
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.2e-12 73.9 56 50.0
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 7.2e-12 73.9 57 50.9
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 9.4e-12 73.6 56 48.2
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.2e-11 73.2 53 50.9
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-11 73.2 55 54.5
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.2e-11 73.2 55 50.9
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.6e-11 72.8 56 48.2
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.6e-11 72.8 52 51.9
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-11 72.4 54 51.9
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 54 51.9
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 54 51.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 57 50.9
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 57 49.1
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.1e-11 72.4 57 49.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 56 42.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.1e-11 72.4 50 58.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 56 50.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.7e-11 72.0 57 50.9
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.7e-11 72.0 57 50.9
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.7e-11 72.0 54 50.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.7e-11 72.0 52 50.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.6e-11 71.6 57 49.1
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.6e-11 71.6 56 46.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 3.6e-11 71.6 54 50.0
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.6e-11 71.6 57 50.9
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.6e-11 71.2 62 43.5
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 4.6e-11 71.2 52 50.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-11 71.2 56 50.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-11 71.2 56 50.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 6.1e-11 70.9 56 50.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.1e-11 70.9 53 50.9
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 7.9e-11 70.5 59 49.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 7.9e-11 70.5 59 49.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.0e-10 70.1 49 55.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 54 50.0
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.0e-10 70.1 56 46.4
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 59 49.2
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 59 49.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.0e-10 70.1 50 56.0
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.0e-10 70.1 59 47.5
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-10 70.1 54 50.0
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.4e-10 69.7 52 48.1
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 59 49.2
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.4e-10 69.7 60 45.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 53 49.1
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.8e-10 69.3 51 45.1
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.8e-10 69.3 59 44.1
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.8e-10 69.3 57 50.9
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 54 51.9
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.3e-10 68.9 51 47.1
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 68.9 54 50.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 68.9 54 50.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-10 68.9 50 54.0
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.0e-10 68.6 49 53.1
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 3.9e-10 68.2 54 51.9
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-10 68.2 54 51.9
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 3.9e-10 68.2 58 50.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.1e-10 67.8 49 49.0
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-10 67.8 55 52.7
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.7e-10 67.4 49 51.0
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 6.7e-10 67.4 51 47.1
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-10 67.4 59 45.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 6.7e-10 67.4 51 54.9
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.8e-10 67.0 54 48.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 8.8e-10 67.0 51 47.1
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 8.8e-10 67.0 50 54.0
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.1e-09 66.6 56 48.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 66.2 49 51.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 62 40.3
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.5e-09 66.2 51 43.1
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-09 66.2 57 38.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-09 65.9 52 51.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 52 51.9
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 52 51.9
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-09 65.9 43 58.1
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-09 65.5 52 50.0
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-09 65.5 52 50.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-09 65.5 54 48.1
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 2.5e-09 65.5 52 44.2
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 3.3e-09 65.1 50 48.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.7e-09 64.3 53 45.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.7e-09 64.3 52 44.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.7e-09 64.3 57 45.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 54 40.7
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 54 40.7
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 51 41.2
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 52 42.3
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 56 46.4
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.7e-08 62.8 51 45.1
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 56 42.9
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.2e-08 62.4 56 42.9
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-08 62.4 50 46.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.2e-08 62.4 53 41.5
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-08 62.0 53 43.4
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 3.7e-08 61.6 50 46.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.8e-08 61.2 49 49.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 6.3e-08 60.8 49 44.9
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.4e-07 59.7 50 44.0
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-07 59.3 48 45.8
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-07 59.3 50 48.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-07 58.2 50 48.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-07 58.2 50 48.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-07 57.8 46 52.2
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 9.1e-07 57.0 57 36.8
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-06 55.8 50 44.0
Nitab4.5_0005244g0100 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-06 55.1 41 53.7
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.4e-06 55.1 59 47.5


User provided reference genes

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