Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-55 219.5 105 100.0
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.4e-26 121.3 100 58.0
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.7e-25 119.4 99 56.6
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-23 113.2 100 52.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.2e-19 97.8 105 48.6
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.2e-19 97.8 105 48.6
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 6.8e-19 97.4 98 48.0
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-18 95.9 54 72.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.3e-17 90.5 92 47.8
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.3e-17 90.5 101 43.6
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.4e-16 87.8 99 46.5
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-15 86.7 106 44.3
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-15 85.9 102 42.2
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-15 85.1 103 44.7
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-15 85.1 105 41.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.5e-15 84.7 104 42.3
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.5e-15 84.7 104 42.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.9e-15 84.3 107 42.1
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 7.7e-15 84.0 69 55.1
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 7.7e-15 84.0 103 43.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-14 83.2 101 41.6
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.3e-14 83.2 91 44.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.7e-14 82.8 92 43.5
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-14 82.8 105 40.0
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.7e-14 82.8 91 49.5
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.2e-14 82.4 91 48.4
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.2e-14 82.4 104 41.3
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 2.9e-14 82.0 102 43.1
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-14 82.0 104 43.3
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.9e-14 82.0 100 43.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 2.9e-14 82.0 106 40.6
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 3.8e-14 81.6 94 43.6
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 3.8e-14 81.6 95 48.4
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 5.0e-14 81.3 104 43.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.0e-14 81.3 101 39.6
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 5.0e-14 81.3 54 57.4
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.5e-14 80.9 54 63.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.5e-14 80.9 103 42.7
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 6.5e-14 80.9 104 41.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.5e-14 80.5 54 61.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 8.5e-14 80.5 102 39.2
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 8.5e-14 80.5 90 48.9
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.5e-13 79.7 108 38.9
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-13 79.7 92 46.7
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-13 79.3 96 42.7
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-13 79.3 109 35.8
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.9e-13 79.3 109 35.8
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.9e-13 79.3 53 60.4
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.9e-13 79.3 53 60.4
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-13 79.3 104 44.2
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.5e-13 79.0 107 40.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-13 79.0 109 35.8
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-13 79.0 68 51.5
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.5e-13 79.0 97 42.3
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 3.2e-13 78.6 104 38.5
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.2e-13 78.6 91 42.9
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-13 78.6 101 44.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.2e-13 78.6 103 41.7
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.2e-13 78.2 101 37.6
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.2e-13 78.2 101 37.6
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 5.5e-13 77.8 98 39.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.5e-13 77.8 101 44.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 5.5e-13 77.8 96 39.6
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.5e-13 77.0 48 62.5
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.5e-13 77.0 48 62.5
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.5e-13 77.0 104 42.3
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 9.5e-13 77.0 107 43.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-12 76.6 98 43.9
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.6e-12 76.3 56 55.4
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.6e-12 76.3 103 40.8
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-12 76.3 92 40.2
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-12 76.3 107 39.3
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.6e-12 76.3 99 42.4
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.6e-12 76.3 103 37.9
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.1e-12 75.9 107 39.3
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 2.1e-12 75.9 100 39.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 2.7e-12 75.5 53 54.7
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.6e-12 75.1 58 50.0
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.6e-12 75.1 104 41.3
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.6e-12 75.1 109 33.9
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.6e-12 75.1 107 39.3
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.6e-12 75.1 101 35.6
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.6e-12 75.1 100 41.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 4.7e-12 74.7 93 38.7
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.7e-12 74.7 91 41.8
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.1e-12 74.3 101 36.6
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-12 74.3 91 39.6
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 6.1e-12 74.3 104 39.4
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.1e-12 74.3 101 40.6
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 6.1e-12 74.3 98 38.8
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-12 73.9 98 39.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-12 73.9 98 39.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.0e-12 73.9 49 53.1
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.0e-11 73.6 91 40.7
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-11 73.6 54 57.4
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-11 73.2 107 39.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.4e-11 73.2 103 37.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-11 73.2 56 53.6
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.8e-11 72.8 98 39.8
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.8e-11 72.8 103 39.8
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.8e-11 72.8 96 38.5
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.3e-11 72.4 95 42.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-11 72.0 89 40.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.0e-11 72.0 90 40.0
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-11 72.0 103 38.8
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.0e-11 72.0 103 38.8
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.0e-11 72.0 101 41.6
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 4.0e-11 71.6 98 39.8
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.0e-11 71.6 101 41.6
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-11 71.2 55 60.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.8e-11 70.9 48 56.2
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 6.8e-11 70.9 102 37.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-11 70.9 105 37.1
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.8e-11 70.5 102 36.3
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 8.8e-11 70.5 103 36.9
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.8e-11 70.5 105 38.1
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.5e-10 69.7 88 42.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.5e-10 69.7 102 36.3
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.5e-10 69.7 92 38.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-10 69.7 90 43.3
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.5e-10 69.7 96 37.5
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.0e-10 69.3 50 54.0
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 2.0e-10 69.3 97 39.2
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.6e-10 68.9 99 34.3
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-10 68.9 96 37.5
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 2.6e-10 68.9 89 44.9
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.6e-10 68.9 56 50.0
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.6e-10 68.9 104 32.7
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.6e-10 68.9 56 51.8
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.4e-10 68.6 57 45.6
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.4e-10 68.6 54 50.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 4.4e-10 68.2 84 36.9
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 4.4e-10 68.2 49 53.1
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 4.4e-10 68.2 49 53.1
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 5.7e-10 67.8 70 42.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.7e-10 67.8 99 38.4
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.7e-10 67.8 58 50.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.7e-10 67.8 87 40.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 9.8e-10 67.0 99 41.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.8e-10 67.0 99 38.4
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-09 66.6 51 45.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 1.3e-09 66.6 51 52.9
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.3e-09 66.6 60 50.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-09 66.2 54 48.1
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.7e-09 66.2 93 36.6
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.7e-09 66.2 99 40.4
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-09 66.2 49 49.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-09 66.2 51 45.1
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-09 65.9 52 51.9
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-09 65.9 99 40.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-09 65.9 99 40.4
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 2.2e-09 65.9 103 39.8
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-09 65.5 100 38.0
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.8e-09 65.5 103 38.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 3.7e-09 65.1 107 35.5
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.3e-09 64.3 52 50.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-09 64.3 54 46.3
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.3e-09 64.3 52 50.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 6.3e-09 64.3 53 50.9
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.3e-09 63.9 93 39.8
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 8.3e-09 63.9 99 39.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.3e-09 63.9 52 46.2
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 8.3e-09 63.9 51 49.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-08 63.5 54 48.1
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-08 63.5 43 53.5
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-08 63.5 105 33.3
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-08 62.8 101 34.7
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.8e-08 62.8 52 46.2
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 9.2e-08 60.5 88 36.4
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-07 59.3 68 35.3
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.7e-07 58.9 104 34.6
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 4.5e-07 58.2 46 52.2
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.9e-07 57.8 99 35.4
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-07 57.4 91 35.2
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 7.7e-07 57.4 50 46.0
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-06 55.1 43 51.2
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 5.0e-06 54.7 49 36.7
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 8.6e-06 53.9 39 53.8
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 8.6e-06 53.9 64 45.3


User provided reference genes

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