Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-46 187.2 93 100.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-35 152.1 95 84.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-32 142.9 95 77.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-25 119.0 99 56.6
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-24 115.2 88 63.6
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-22 106.7 60 73.3
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-22 106.7 89 57.3
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-22 106.7 89 57.3
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.1e-20 101.3 96 52.1
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.6e-19 99.4 91 48.4
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.1e-19 99.0 83 56.6
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.7e-19 98.6 83 54.2
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-19 98.6 95 50.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.5e-19 98.2 83 57.8
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.5e-19 98.2 82 58.5
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.6e-19 97.8 98 57.1
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.0e-19 97.4 95 46.3
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.0e-19 97.4 92 53.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.3e-18 95.5 82 54.9
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.0e-18 95.1 81 45.7
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.9e-18 94.7 82 56.1
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 6.6e-18 94.0 81 54.3
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.6e-18 93.6 83 51.8
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 8.6e-18 93.6 87 49.4
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 8.6e-18 93.6 81 55.6
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-17 92.4 95 48.4
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.9e-17 92.4 62 59.7
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 2.5e-17 92.0 96 49.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-17 91.7 91 46.2
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.3e-17 91.7 92 46.7
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.3e-17 91.7 92 46.7
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 4.3e-17 91.3 90 46.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-17 91.3 95 50.5
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.3e-17 90.5 89 50.6
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.3e-17 90.5 93 49.5
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.2e-16 89.7 93 49.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-16 89.4 83 49.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.1e-16 89.0 89 49.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-16 88.2 93 49.5
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-16 87.8 87 49.4
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 4.7e-16 87.8 100 51.0
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.2e-16 87.4 83 50.6
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.2e-16 87.4 58 63.8
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.1e-16 87.0 91 42.9
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 8.1e-16 87.0 93 45.2
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 8.1e-16 87.0 93 45.2
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 8.1e-16 87.0 93 43.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 61 57.4
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.1e-15 86.7 94 47.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-15 86.7 93 43.0
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-15 86.3 96 49.0
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 92 51.1
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.4e-15 86.3 94 47.9
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-15 85.9 83 47.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-15 85.9 83 47.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-15 85.9 87 47.1
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-15 85.9 87 47.1
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-15 85.9 49 69.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 2.4e-15 85.5 99 49.5
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-15 85.5 93 50.5
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.4e-15 85.5 97 47.4
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.1e-15 85.1 86 45.3
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 3.1e-15 85.1 70 51.4
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.1e-15 85.1 94 48.9
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.1e-15 85.1 89 50.6
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 4.0e-15 84.7 92 45.7
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-15 84.3 92 45.7
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-15 84.0 95 48.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 6.8e-15 84.0 83 47.0
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 6.8e-15 84.0 83 44.6
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 6.8e-15 84.0 89 48.3
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 8.9e-15 83.6 104 46.2
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 8.9e-15 83.6 54 59.3
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.9e-15 83.6 83 47.0
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-15 83.6 89 44.9
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 8.9e-15 83.6 79 49.4
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.2e-14 83.2 88 40.9
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.5e-14 82.8 94 46.8
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.5e-14 82.8 95 45.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-14 82.8 93 47.3
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.0e-14 82.4 94 45.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.6e-14 82.0 90 45.6
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 2.6e-14 82.0 89 46.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 3.4e-14 81.6 90 40.0
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-14 81.6 91 48.4
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-14 81.6 89 47.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.4e-14 81.6 94 47.9
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.4e-14 81.3 95 41.1
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.8e-14 80.9 79 45.6
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 5.8e-14 80.9 80 48.8
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.8e-14 80.9 94 45.7
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.6e-14 80.5 48 64.6
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.6e-14 80.5 48 64.6
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.6e-14 80.5 83 47.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 7.6e-14 80.5 91 46.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.6e-14 80.5 94 44.7
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.6e-14 80.5 98 44.9
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.6e-14 80.5 94 45.7
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.9e-14 80.1 98 44.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 9.9e-14 80.1 74 51.4
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.3e-13 79.7 71 42.3
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.3e-13 79.7 96 43.8
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-13 79.7 80 47.5
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.7e-13 79.3 66 50.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.2e-13 79.0 83 45.8
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.2e-13 79.0 85 49.4
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.9e-13 78.6 80 53.8
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 3.8e-13 78.2 97 46.4
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-13 77.8 93 44.1
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-13 77.8 91 41.8
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.9e-13 77.8 95 45.3
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 4.9e-13 77.8 85 48.2
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.4e-13 77.4 88 45.5
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 6.4e-13 77.4 91 37.4
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.4e-13 77.0 59 55.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 8.4e-13 77.0 56 58.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 8.4e-13 77.0 93 44.1
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.1e-12 76.6 91 42.9
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.1e-12 76.6 98 42.9
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.1e-12 76.6 97 43.3
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.4e-12 76.3 85 41.2
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.4e-12 76.3 74 50.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-12 76.3 95 42.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.9e-12 75.9 75 48.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.4e-12 75.5 81 46.9
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.4e-12 75.5 94 41.5
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.4e-12 75.5 86 40.7
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 2.4e-12 75.5 87 42.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-12 75.5 62 51.6
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-12 75.5 62 51.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.2e-12 75.1 95 45.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 4.2e-12 74.7 85 45.9
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 4.2e-12 74.7 85 45.9
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 4.2e-12 74.7 85 43.5
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.4e-12 74.3 121 38.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.1e-12 73.9 86 40.7
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 7.1e-12 73.9 50 60.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 7.1e-12 73.9 93 44.1
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 7.1e-12 73.9 54 53.7
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 73 47.9
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.2e-11 73.2 84 44.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-11 73.2 86 39.5
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 79 44.3
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-11 72.8 52 57.7
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 85 44.7
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.1e-11 72.4 95 42.1
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 91 42.9
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.7e-11 72.0 96 44.8
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.5e-11 71.6 80 43.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-11 71.6 58 51.7
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 3.5e-11 71.6 63 52.4
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 4.6e-11 71.2 93 41.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.8e-11 70.5 89 34.8
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.8e-11 70.5 83 45.8
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-10 69.7 84 41.7
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-10 69.7 87 42.5
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-10 69.3 49 49.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.7e-10 69.3 49 59.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.0e-10 68.6 59 52.5
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.9e-10 68.2 82 39.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.1e-10 67.8 81 39.5
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-10 67.4 81 39.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 6.6e-10 67.4 81 38.3
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-09 66.6 80 47.5
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-09 65.9 87 39.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-09 65.5 81 38.3
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.3e-09 65.1 94 39.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-09 64.7 46 58.7
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-09 64.7 87 40.2
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.3e-09 64.7 43 58.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.3e-09 63.9 87 39.1
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 9.6e-09 63.5 86 39.5
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-08 63.2 85 31.8
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-08 62.8 63 38.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-08 62.0 84 39.3
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.8e-08 62.0 88 35.2
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-08 61.2 81 42.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 4.8e-08 61.2 89 37.1
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.4e-07 58.9 57 50.9
Nitab4.5_0005244g0100 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.0e-07 58.2 78 43.6
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.9e-07 57.4 48 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1385 Anthoceros agrestis HOM05D001575 ORTHO05D001536 1.2e-06 56.6 75 38.7
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-06 56.6 81 39.5


User provided reference genes

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