Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 2.2e-109 399.1 210 100.0
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 7.1e-28 128.3 226 42.0
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 3.5e-27 125.9 199 44.2
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 2.3e-26 123.2 224 40.6
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 1.3e-24 117.5 196 42.9
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 1.1e-23 114.4 205 38.0
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 1.4e-23 114.0 129 50.4
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 1.8e-23 113.6 224 40.2
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.1e-23 112.8 224 40.2
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 4.1e-23 112.5 127 52.0
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 1.2e-22 110.9 212 45.3
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.2e-22 110.9 194 43.3
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 2.0e-22 110.2 209 39.2
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 2.0e-22 110.2 204 38.7
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 2.0e-22 110.2 205 46.3
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 3.4e-22 109.4 210 38.1
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 3.4e-22 109.4 202 38.6
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 1.7e-21 107.1 193 42.0
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 2.2e-21 106.7 210 41.0
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 2.2e-21 106.7 222 41.0
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 3.8e-21 105.9 192 40.6
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 5.0e-21 105.5 192 40.6
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 5.0e-21 105.5 211 39.8
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 6.5e-21 105.1 207 39.1
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 8.5e-21 104.8 238 33.6
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 3.2e-20 102.8 128 47.7
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 4.2e-20 102.4 225 36.0
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 5.5e-20 102.1 210 39.5
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 7.2e-20 101.7 225 38.2
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 7.2e-20 101.7 221 40.7
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 7.2e-20 101.7 198 38.4
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 9.4e-20 101.3 227 38.3
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.2e-19 100.9 222 41.4
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 1.2e-19 100.9 193 39.9
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 1.2e-19 100.9 203 37.4
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 2.1e-19 100.1 114 48.2
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 3.6e-19 99.4 209 37.3
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 3.6e-19 99.4 185 40.5
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 3.6e-19 99.4 128 55.5
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 3.6e-19 99.4 128 55.5
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 3.6e-19 99.4 223 41.3
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 6.1e-19 98.6 211 36.5
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 6.1e-19 98.6 129 52.7
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 6.1e-19 98.6 185 41.6
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 6.1e-19 98.6 116 52.6
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 1.0e-18 97.8 197 39.1
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 1.4e-18 97.4 194 35.1
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 1.4e-18 97.4 116 50.0
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 1.8e-18 97.1 222 37.8
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 1.8e-18 97.1 216 39.4
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 2.3e-18 96.7 208 43.8
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 2.3e-18 96.7 190 39.5
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 3.9e-18 95.9 139 43.9
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 3.9e-18 95.9 202 38.1
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 8.8e-18 94.7 256 36.3
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 8.8e-18 94.7 118 50.0
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 1.5e-17 94.0 202 39.1
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 2.0e-17 93.6 225 35.1
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 2.0e-17 93.6 225 35.1
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 2.0e-17 93.6 198 38.4
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 4.3e-17 92.4 122 42.6
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 7.4e-17 91.7 118 46.6
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 9.7e-17 91.3 131 45.0
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 1.3e-16 90.9 200 35.0
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.8e-16 89.7 191 43.5
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 2.8e-16 89.7 210 36.7
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 3.7e-16 89.4 202 38.6
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 3.7e-16 89.4 191 43.5
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 6.3e-16 88.6 195 36.9
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 8.2e-16 88.2 217 33.6
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 1.1e-15 87.8 215 35.8
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.8e-15 87.0 207 34.3
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.4e-15 86.7 191 42.4
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 2.4e-15 86.7 161 37.9
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 3.1e-15 86.3 122 46.7
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 4.1e-15 85.9 191 33.5
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 5.3e-15 85.5 206 36.4
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 5.3e-15 85.5 126 43.7
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 6.9e-15 85.1 139 47.5
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.4e-14 82.8 207 35.3
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 4.5e-14 82.4 213 37.1
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 1.3e-13 80.9 223 33.6
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 1.3e-13 80.9 208 32.2
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 3.8e-13 79.3 179 34.6
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 6.5e-13 78.6 196 34.7
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 1.9e-12 77.0 206 37.9
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 7.2e-12 75.1 117 43.6
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 7.2e-12 75.1 183 35.0
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 9.4e-12 74.7 203 34.0
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 9.4e-12 74.7 119 44.5
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 1.6e-11 73.9 184 38.6
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 2.1e-11 73.6 207 33.3
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 2.1e-11 73.6 200 38.0
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 7.9e-11 71.6 184 38.6
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 1.0e-10 71.2 201 30.8
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 1.4e-10 70.9 145 42.1
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 2.3e-10 70.1 210 32.9
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 8.8e-10 68.2 205 38.0
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 1.5e-09 67.4 183 33.3
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.5e-09 67.4 143 37.8
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 7.4e-09 65.1 234 29.5
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.8e-08 63.2 191 36.6
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 2.8e-08 63.2 191 36.6
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 6.3e-08 62.0 206 36.4
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 3.1e-07 59.7 168 30.4
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 3.1e-07 59.7 204 34.8
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 4.1e-07 59.3 139 35.3
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 7.0e-07 58.5 178 37.1
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 7.0e-07 58.5 80 46.2
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 3.5e-06 56.2 225 29.8


User provided reference genes

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