Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 4.7e-138 494.6 259 100.0
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 9.7e-43 177.9 253 48.2
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.4e-36 157.5 282 46.1
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 7.4e-35 151.8 291 45.4
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.4e-35 151.8 271 47.2
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 1.1e-33 147.9 243 44.0
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.8e-33 147.1 274 45.3
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 2.4e-33 146.7 276 45.7
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-32 144.1 283 44.9
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-32 144.1 283 44.9
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 2.5e-30 136.7 283 41.7
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 2.5e-30 136.7 283 41.7
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 9.4e-30 134.8 293 42.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 9.4e-30 134.8 284 45.4
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 9.4e-30 134.8 269 43.1
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.1e-29 133.7 275 42.9
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.0e-28 131.3 275 42.9
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 2.3e-28 130.2 281 41.3
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.2e-27 127.9 282 42.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.2e-27 127.9 312 42.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 9.7e-27 124.8 277 40.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.3e-26 124.4 285 40.4
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.7e-26 124.0 282 39.4
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 2.2e-26 123.6 292 42.5
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.2e-26 123.6 278 41.4
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-24 117.5 268 41.8
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-24 117.5 268 41.8
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.9e-23 113.2 279 41.6
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 5.0e-23 112.5 276 39.1
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 1.1e-22 111.3 312 37.5
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.1e-22 111.3 275 41.5
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 3.2e-22 109.8 265 40.4
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.2e-22 109.8 296 42.6
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 9.4e-22 108.2 284 38.0
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.6e-21 107.5 320 36.6
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 2.1e-21 107.1 247 39.7
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.1e-21 105.5 318 38.4
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 8.0e-21 105.1 325 36.3
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.0e-20 104.8 324 37.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.0e-20 104.8 283 38.9
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.8e-20 104.0 213 42.3
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 4.0e-20 102.8 307 36.8
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 6.8e-20 102.1 304 36.8
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 6.8e-20 102.1 289 35.6
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 5.7e-19 99.0 282 38.3
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 7.5e-19 98.6 238 40.8
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.7e-18 97.4 191 44.5
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.7e-18 97.4 326 34.7
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.7e-18 97.4 314 36.6
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.7e-18 97.4 275 38.2
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.2e-18 97.1 299 37.1
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.2e-18 97.1 285 34.7
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.3e-18 95.5 312 34.3
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 8.3e-18 95.1 259 36.7
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 8.3e-18 95.1 211 47.9
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.1e-17 94.7 270 36.7
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.1e-17 94.7 251 39.0
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-17 94.4 311 35.4
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.8e-17 94.0 285 37.2
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.4e-17 93.6 323 36.2
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 5.4e-17 92.4 311 36.3
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.2e-16 91.3 277 38.3
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 1.2e-16 91.3 271 37.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.2e-16 91.3 335 33.4
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.6e-16 90.9 292 36.6
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.7e-16 90.1 296 34.1
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.5e-16 89.4 286 35.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.3e-15 87.8 290 35.2
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 1.7e-15 87.4 287 36.9
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 3.8e-15 86.3 275 37.8
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.8e-15 86.3 284 35.6
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.8e-15 86.3 284 35.6
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.8e-15 86.3 287 35.5
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 5.0e-15 85.9 306 34.0
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 5.0e-15 85.9 288 34.0
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 8.6e-15 85.1 288 33.7
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 8.6e-15 85.1 329 35.6
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.5e-14 84.3 261 38.3
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 1.5e-14 84.3 303 36.0
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.5e-14 84.3 285 36.8
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.5e-14 83.6 296 34.5
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 3.3e-14 83.2 290 34.5
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.2e-14 82.8 295 33.9
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 4.2e-14 82.8 320 35.3
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 5.5e-14 82.4 280 34.6
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 9.5e-14 81.6 307 35.8
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 9.5e-14 81.6 275 34.2
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 9.5e-14 81.6 276 33.7
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.2e-13 81.3 93 51.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 1.6e-13 80.9 268 36.6
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 3.6e-13 79.7 298 33.9
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.7e-13 79.3 269 34.6
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 4.7e-13 79.3 303 35.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.0e-12 78.2 311 37.3
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 3.0e-12 76.6 238 37.4
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 3.0e-12 76.6 278 35.3
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 3.0e-12 76.6 276 33.7
Solyc03g006600.1 Solanum lycopersicum HOM05D021131 ORTHO05D022971 4.0e-12 76.3 96 49.0
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 4.0e-12 76.3 96 49.0
SGA_v2.0_scaffold22G09746 Striga asiatica HOM05D004441 ORTHO05D003109 4.0e-12 76.3 260 36.2
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.8e-12 75.5 252 38.9
DCAR_012433 Daucus carota HOM05D004441 ORTHO05D003109 1.5e-11 74.3 45 86.7
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 3.4e-11 73.2 344 31.7
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 5.7e-11 72.4 303 31.0
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 7.5e-11 72.0 305 33.1
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 9.8e-11 71.6 238 34.9
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 9.8e-11 71.6 239 36.0
PGSC0003DMG400005055 Solanum tuberosum HOM05D021131 ORTHO05D022971 9.8e-11 71.6 96 45.8
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.7e-10 70.9 292 33.9
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 3.7e-10 69.7 272 32.4
Peaxi162Scf00137g00062 Petunia axillaris HOM05D021131 ORTHO05D022971 4.9e-10 69.3 258 36.0
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 4.9e-10 69.3 324 33.3
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 6.3e-10 68.9 300 31.3
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 8.3e-10 68.6 217 36.4
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-09 68.2 327 33.0
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.4e-09 67.8 248 35.5
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 1.4e-09 67.8 273 34.4
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.8e-09 67.4 290 32.4
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 1.8e-09 67.4 278 30.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.8e-09 67.4 270 33.3
Migut.H01500 Erythranthe guttata HOM05D004441 ORTHO05D003109 2.4e-09 67.0 109 48.6
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 3.2e-09 66.6 306 31.4
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 3.2e-09 66.6 302 32.1
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 4.1e-09 66.2 265 32.5
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 5.4e-09 65.9 264 36.4
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 7.0e-09 65.5 249 33.7
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.2e-08 64.7 297 32.0
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 2.0e-08 63.9 271 32.8
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 2.0e-08 63.9 271 32.8
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 2.0e-08 63.9 271 32.8
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 2.0e-08 63.9 271 32.8
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.7e-08 63.5 267 32.2
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.7e-08 63.5 297 32.0
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 4.5e-08 62.8 247 34.0
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 4.5e-08 62.8 272 32.4
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 4.5e-08 62.8 272 32.4
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 4.5e-08 62.8 272 32.4
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 4.5e-08 62.8 244 33.2
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 4.5e-08 62.8 274 35.4
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 5.9e-08 62.4 325 32.0
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 5.9e-08 62.4 279 31.9
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 7.8e-08 62.0 271 32.5
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.0e-07 61.6 292 32.2
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.3e-07 61.2 251 34.7
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.3e-07 61.2 268 31.3
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.3e-07 60.5 197 35.0
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.9e-07 60.1 275 31.3
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 3.9e-07 59.7 247 34.0
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 3.9e-07 59.7 186 36.0
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.9e-07 59.7 268 32.1
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.0e-07 59.3 266 33.5
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 5.0e-07 59.3 302 31.1
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 5.0e-07 59.3 278 32.4
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 6.6e-07 58.9 269 32.3
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 6.6e-07 58.9 269 32.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 8.6e-07 58.5 266 32.3
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 8.6e-07 58.5 288 30.6
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 8.6e-07 58.5 265 33.6
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 8.6e-07 58.5 282 33.3
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 8.6e-07 58.5 265 34.3
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 8.6e-07 58.5 284 28.2
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.5e-06 57.8 291 30.2
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 1.9e-06 57.4 265 34.7
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 1.9e-06 57.4 306 31.4
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.5e-06 57.0 311 32.8
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 3.3e-06 56.6 271 31.7
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 7.3e-06 55.5 252 31.7
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 9.5e-06 55.1 266 33.1
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 9.5e-06 55.1 297 32.0


User provided reference genes

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