Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 8.5e-252 873.2 457 100.0
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 6.7e-47 192.6 304 40.5
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.1e-46 191.8 463 34.6
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 3.9e-39 166.8 458 34.9
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 1.7e-37 161.4 321 38.0
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 1.4e-36 158.3 295 38.0
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 5.3e-36 156.4 267 43.1
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 7.0e-36 156.0 369 38.8
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 3.8e-34 150.2 192 49.0
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 1.4e-31 141.7 387 31.0
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 1.8e-31 141.4 241 39.8
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 5.2e-31 139.8 449 30.1
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 5.2e-31 139.8 422 29.6
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 7.5e-30 136.0 422 29.6
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 7.5e-30 136.0 325 34.8
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 2.2e-29 134.4 363 32.0
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 6.3e-29 132.9 304 34.5
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 1.1e-28 132.1 342 33.0
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 4.1e-28 130.2 522 28.9
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 4.1e-28 130.2 416 31.0
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 1.6e-27 128.3 332 34.3
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 2.0e-27 127.9 324 32.7
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 7.7e-27 125.9 363 32.0
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 1.0e-26 125.6 313 35.1
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 2.2e-26 124.4 290 35.5
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 3.8e-26 123.6 217 40.1
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 3.8e-26 123.6 279 35.8
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 4.2e-25 120.2 286 35.7
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 1.6e-24 118.2 266 35.3
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 3.6e-24 117.1 268 38.1
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 6.1e-24 116.3 389 28.5
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 1.0e-23 115.5 334 32.9
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 1.0e-23 115.5 255 38.0
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 1.2e-22 112.1 416 30.5
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 1.2e-22 112.1 325 30.5
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 2.6e-22 110.9 328 31.7
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 5.7e-22 109.8 410 30.7
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 5.7e-22 109.8 328 32.0
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 7.5e-22 109.4 323 33.1
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 7.5e-22 109.4 308 33.8
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 7.5e-22 109.4 417 27.1
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 9.8e-22 109.0 323 33.7
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 9.8e-22 109.0 275 34.5
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 9.8e-22 109.0 452 29.9
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 1.3e-21 108.6 377 30.2
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 2.2e-21 107.8 330 31.8
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 2.8e-21 107.5 306 33.7
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 3.7e-21 107.1 285 33.0
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 3.7e-21 107.1 294 31.6
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 2.4e-20 104.4 175 41.1
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 4.5e-19 100.1 377 29.2
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 5.9e-19 99.8 148 43.9
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 6.6e-18 96.3 282 28.7
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 8.6e-18 95.9 305 29.5
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 1.1e-17 95.5 199 38.7
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 1.1e-17 95.5 199 38.7
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 1.1e-17 95.5 199 38.7
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 1.5e-17 95.1 307 31.6
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 1.9e-17 94.7 154 39.6
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 2.5e-17 94.4 355 28.2
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 2.5e-17 94.4 337 30.9
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 3.3e-17 94.0 238 34.0
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 5.5e-17 93.2 291 29.2
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 5.5e-17 93.2 335 28.1
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 7.2e-17 92.8 335 27.8
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 7.2e-17 92.8 145 44.1
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 1.2e-16 92.0 283 33.6
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 1.6e-16 91.7 202 38.6
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 2.8e-16 90.9 233 33.5
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 3.6e-16 90.5 238 34.9
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 3.6e-16 90.5 238 34.9
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 6.1e-16 89.7 237 33.3
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 1.0e-15 89.0 161 41.6
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 2.3e-15 87.8 240 35.8
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 5.2e-15 86.7 333 27.9
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 6.8e-15 86.3 255 34.1
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 8.9e-15 85.9 278 31.7
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 1.2e-14 85.5 230 33.5
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 1.5e-14 85.1 411 28.2
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 2.0e-14 84.7 168 36.3
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 2.6e-14 84.3 209 34.9
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 7.5e-14 82.8 449 24.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 8.3e-13 79.3 260 29.6
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.3e-10 71.2 63 52.4
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.8e-10 70.5 69 50.7
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.9e-09 68.2 293 29.0
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 3.3e-09 67.4 63 54.0
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 9.5e-09 65.9 516 22.7
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.3e-07 61.2 61 55.7
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 4.0e-07 60.5 484 26.0
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 4.0e-07 60.5 61 55.7
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 8.9e-07 59.3 166 31.9
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 2.0e-06 58.2 111 41.4
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.0e-06 58.2 188 28.7
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 2.6e-06 57.8 52 61.5
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 3.4e-06 57.4 97 41.2
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 4.4e-06 57.0 116 36.2
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 4.4e-06 57.0 61 52.5


User provided reference genes

Program Settings