Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 0.0e+00 1110.5 558 100.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.8e-305 1051.2 559 94.3
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 3.0e-230 802.0 570 71.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 6.2e-228 794.3 559 72.8
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.1e-227 792.0 559 72.6
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.1e-224 783.5 557 73.4
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 7.0e-224 780.8 558 73.3
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 7.8e-223 777.3 558 72.4
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.3e-222 776.5 554 72.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.7e-222 776.2 558 71.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 3.0e-222 775.4 558 71.7
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 4.3e-221 771.5 568 69.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.7e-220 768.1 564 71.1
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.0e-219 765.0 558 72.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.2e-219 764.6 562 71.2
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 8.9e-219 763.8 557 71.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 7.5e-218 760.8 553 70.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-216 756.9 565 70.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.1e-216 756.9 566 68.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-216 756.9 574 69.7
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.9e-216 756.1 557 70.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.2e-216 755.4 553 71.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 4.6e-215 751.5 565 69.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 7.8e-215 750.7 566 68.0
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 4.3e-213 745.0 565 67.4
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-212 743.4 581 66.4
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-212 742.3 564 67.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 6.2e-212 741.1 572 67.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-211 740.3 564 67.7
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-211 738.8 560 68.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-211 738.8 560 68.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.6e-210 734.2 569 67.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 9.9e-210 733.8 562 69.8
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.3e-209 733.4 554 69.5
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.3e-209 733.4 559 68.9
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.1e-208 730.3 567 67.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.4e-208 729.2 566 67.5
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.2e-208 728.4 560 67.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.1e-207 726.1 569 66.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.3e-206 722.6 558 66.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.5e-205 719.9 549 67.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.9e-205 719.5 557 67.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-204 716.8 568 66.0
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.2e-204 714.5 491 73.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.0e-203 711.8 564 66.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-202 710.3 581 62.7
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.5e-202 709.9 557 66.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.4e-202 708.8 562 67.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-201 706.8 555 67.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.2e-200 702.2 578 65.1
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.6e-199 698.4 579 64.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-198 697.2 579 64.4
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.0e-198 697.2 554 66.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.0e-198 697.2 575 64.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-198 696.4 579 64.4
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.7e-198 696.4 579 64.4
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.5e-197 693.3 577 63.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 4.3e-197 691.8 553 66.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.8e-196 689.1 576 63.7
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.6e-196 688.7 579 64.2
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.6e-196 688.7 566 64.3
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 6.2e-196 688.0 559 66.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 8.1e-196 687.6 554 63.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 8.1e-196 687.6 566 62.5
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-195 686.8 555 64.1
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.4e-195 686.8 562 63.3
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.8e-195 686.4 580 63.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.0e-195 685.3 436 78.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-194 681.8 573 63.2
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.6e-194 681.0 558 65.8
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 9.9e-194 680.6 562 62.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.9e-193 679.1 573 62.7
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.9e-193 678.3 557 64.1
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.2e-191 673.7 579 61.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-191 673.3 576 61.8
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.5e-191 672.2 556 61.7
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.5e-191 672.2 566 62.5
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 6.0e-191 671.4 561 64.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.3e-189 665.6 560 61.6
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-188 663.3 582 61.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.8e-188 662.5 556 63.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.8e-188 662.5 566 61.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-187 660.6 556 63.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-187 659.4 561 62.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.0e-187 658.7 438 72.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.0e-187 658.7 558 61.3
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 6.9e-187 657.9 564 61.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 9.0e-187 657.5 563 60.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-186 657.1 576 61.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-186 656.8 556 62.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-186 656.8 561 63.1
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.8e-186 654.8 560 60.9
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.7e-185 653.3 434 76.0
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 7.1e-184 647.9 567 59.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-183 647.1 560 60.2
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-183 647.1 560 60.4
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.3e-182 643.7 563 59.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-182 642.9 566 59.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-182 642.5 568 60.7
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.9e-182 642.1 559 60.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 7.4e-181 637.9 560 61.4
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-180 637.1 564 61.3
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-180 637.1 562 60.9
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.6e-180 636.7 394 77.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-180 635.2 574 59.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-178 630.2 568 60.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.3e-177 627.1 555 62.2
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.9e-177 625.9 564 61.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 7.1e-176 621.3 567 57.7
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 5.3e-171 605.1 455 64.8
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 3.4e-170 602.4 538 59.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.8e-169 599.0 560 59.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.2e-168 595.9 560 57.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-167 593.6 401 72.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.1e-167 593.2 561 56.3
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.4e-163 580.5 581 53.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.1e-163 578.9 384 72.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-162 576.6 543 57.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 4.8e-156 555.4 337 79.2
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 3.8e-153 545.8 564 56.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.9e-152 543.5 560 53.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.1e-149 534.3 513 54.6
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.7e-148 530.4 551 55.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.8e-142 508.1 301 80.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.8e-129 466.1 438 50.5
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.4e-126 457.6 482 55.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.8e-110 404.1 399 56.4
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.8e-103 380.2 366 50.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.7e-98 363.6 488 45.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 6.2e-95 352.4 197 84.3
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.9e-93 345.1 356 52.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 6.4e-92 342.4 319 61.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.1e-90 337.4 369 50.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.7e-89 332.0 206 77.2
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-77 293.1 296 55.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.1e-73 279.6 155 83.9
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.9e-57 226.9 204 56.9
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.5e-48 197.6 237 53.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.7e-47 194.9 286 45.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.9e-46 189.5 175 62.3
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-36 158.7 96 75.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.3e-36 158.7 256 40.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-35 154.8 91 76.9
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.4e-32 143.7 510 25.1
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.7e-26 123.6 79 74.7
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.0e-25 120.9 115 54.8
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.4e-24 117.5 74 71.6
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-23 114.8 69 73.9
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-22 112.1 69 72.5
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.0e-20 103.6 180 33.9
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.5e-19 100.1 152 42.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 8.8e-17 92.8 51 82.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 8.8e-17 92.8 73 61.6
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.1e-11 75.9 124 43.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.8e-09 68.6 75 49.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.3e-07 62.4 55 52.7


User provided reference genes

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