Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.5e-264 915.6 461 100.0
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 5.0e-183 644.8 446 75.8
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 5.5e-182 641.3 456 73.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.1e-181 639.4 449 75.3
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.4e-180 636.7 456 73.5
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 8.8e-180 634.0 455 74.3
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.1e-179 633.6 453 73.5
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.5e-179 633.3 461 72.2
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.6e-179 632.5 457 72.9
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.3e-179 632.1 453 74.8
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 7.5e-179 630.9 467 71.3
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 2.2e-178 629.4 456 71.9
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.8e-178 629.0 456 73.0
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 4.1e-177 625.2 443 74.7
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 7.0e-177 624.4 446 72.2
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 9.1e-177 624.0 394 80.2
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 2.0e-176 622.9 465 70.8
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 3.5e-176 622.1 421 77.0
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.5e-176 621.7 421 76.7
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.7e-176 620.9 452 72.3
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 2.9e-175 619.0 417 75.3
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 5.0e-175 618.2 392 81.1
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.5e-174 615.9 460 70.9
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 4.2e-174 615.1 465 71.0
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 7.2e-174 614.4 465 71.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.6e-173 613.2 386 80.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.7e-173 612.5 394 78.7
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 2.7e-173 612.5 386 80.1
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 3.0e-172 609.0 443 72.7
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 5.2e-172 608.2 454 71.1
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.2e-171 607.1 435 74.5
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.2e-171 607.1 396 77.3
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 2.8e-170 602.4 433 72.3
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 4.8e-170 601.7 461 69.6
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 7.0e-169 597.8 463 68.9
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 5.0e-167 591.7 422 73.5
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 5.5e-166 588.2 463 68.7
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.7e-165 585.9 486 66.3
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.6e-165 585.5 434 72.4
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 8.0e-165 584.3 402 74.6
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.0e-164 583.9 402 74.6
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.0e-164 583.9 398 75.6
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.4e-164 583.6 434 71.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.3e-164 582.8 374 79.4
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 5.2e-164 581.6 393 76.1
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 6.8e-164 581.3 372 79.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 6.8e-164 581.3 438 71.0
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.2e-163 580.5 434 71.4
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 7.5e-163 577.8 432 71.1
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 9.8e-163 577.4 432 71.1
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 8.3e-162 574.3 387 78.3
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.4e-161 572.8 431 70.8
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 3.5e-160 568.9 394 75.6
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 4.5e-160 568.5 425 70.1
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 4.5e-160 568.5 455 67.0
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-159 567.0 387 76.2
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.9e-159 565.8 386 75.6
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 8.6e-159 564.3 594 57.4
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.1e-158 563.9 460 66.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 3.3e-158 562.4 458 67.2
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 4.3e-158 562.0 399 73.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 3.6e-157 558.9 412 71.1
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 4.7e-157 558.5 452 65.9
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 8.0e-157 557.8 462 66.7
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 7.5e-155 551.2 449 67.3
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.7e-154 550.1 423 68.6
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.7e-154 550.1 367 76.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.4e-153 547.0 417 71.5
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.0e-152 543.1 421 69.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.3e-151 539.7 354 78.2
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 8.0e-149 531.2 492 61.2
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.5e-147 526.9 446 65.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 7.5e-147 524.6 471 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.0e-143 514.2 400 66.2
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.5e-142 510.4 347 76.9
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.3e-142 509.2 423 66.0
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.6e-141 505.8 456 60.7
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.3e-140 503.1 391 68.8
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 8.9e-140 501.1 446 63.0
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.3e-138 497.3 399 66.7
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 3.2e-137 492.7 464 59.5
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 5.4e-137 491.9 392 64.0
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.2e-136 490.7 401 63.8
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.3e-134 482.3 458 61.8
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 4.0e-132 475.7 395 65.8
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 6.8e-132 474.9 398 65.3
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.8e-131 471.9 450 60.0
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 8.4e-130 468.0 358 70.4
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.4e-124 449.9 299 77.3
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 6.2e-117 425.2 364 66.8
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.3e-114 417.5 348 66.1
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.1e-112 410.2 408 53.7
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.5e-110 403.3 396 56.3
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.1e-109 400.2 306 72.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 9.0e-108 394.8 257 79.8
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 6.7e-103 378.6 492 46.5
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 3.4e-99 366.3 272 70.2
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.8e-90 336.3 257 72.4
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 2.6e-83 313.5 204 74.5
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.5e-81 305.8 257 68.1
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.4e-81 305.1 251 68.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.9e-74 283.5 530 38.5
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.2e-73 280.0 185 74.6
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 5.5e-73 279.3 238 69.3
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.0e-71 275.0 185 72.4
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.6e-67 261.2 173 78.0
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.6e-64 250.0 165 77.0
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.8e-63 247.7 203 67.5
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 3.0e-63 246.9 368 45.7
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 3.7e-61 240.0 155 78.7
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.4e-60 237.3 185 67.0
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 3.5e-59 233.4 179 70.4
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 7.2e-57 225.7 249 55.0
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 7.2e-57 225.7 249 55.0
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 7.2e-57 225.7 249 55.0
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 7.2e-57 225.7 137 80.3
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-53 214.9 146 76.0
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 2.8e-53 213.8 252 54.8
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 5.2e-47 193.0 162 61.1
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 9.2e-44 182.2 131 70.2
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.2e-43 181.8 152 69.1
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.1e-40 169.5 124 73.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.0e-39 168.7 119 70.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.4e-36 157.5 186 55.4
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 8.6e-34 149.1 118 65.3
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 9.5e-33 145.6 144 53.5
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.3e-26 125.2 81 80.2
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 5.0e-26 123.2 81 79.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.9e-25 121.3 124 55.6
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 5.6e-25 119.8 81 70.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.8e-24 117.5 74 75.7
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 3.5e-19 100.5 62 77.4
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.0e-18 97.4 82 63.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.5e-17 95.1 167 37.7
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 6.8e-15 86.3 179 39.7
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.6e-11 75.1 114 40.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.6e-11 73.6 64 64.1
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.6e-08 65.1 132 36.4
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.4e-07 62.0 143 32.9


User provided reference genes

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