Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 3.6e-137 492.3 406 100.0
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 9.1e-80 301.6 383 73.9
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.7e-79 300.1 384 73.7
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.0e-78 298.1 383 73.9
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.5e-77 294.3 385 70.6
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.9e-77 293.9 380 69.2
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 7.2e-77 292.0 318 79.2
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 9.4e-77 291.6 394 67.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 9.4e-77 291.6 386 74.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.7e-76 289.3 320 76.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 8.0e-76 288.5 383 70.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 5.2e-75 285.8 386 70.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.0e-74 283.9 380 72.1
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.7e-74 282.3 382 70.2
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 7.5e-74 282.0 387 67.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.5e-74 282.0 381 71.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.2e-73 280.4 383 70.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.8e-73 279.3 390 65.4
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 8.3e-73 278.5 385 70.1
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-72 278.1 388 73.7
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.1e-72 278.1 385 67.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.4e-72 277.7 382 69.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.4e-72 275.8 383 66.8
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 7.0e-72 275.4 386 71.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.6e-71 274.2 383 65.3
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.7e-71 273.5 384 70.3
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.7e-71 273.5 383 70.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 3.5e-71 273.1 386 67.4
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 7.7e-71 271.9 388 70.6
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.3e-70 271.2 384 69.3
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.8e-70 269.6 387 65.6
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 8.6e-70 268.5 379 71.2
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 8.6e-70 268.5 379 71.2
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.1e-69 268.1 386 66.3
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.5e-69 267.7 386 66.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.5e-69 266.9 387 72.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.5e-69 265.8 380 71.1
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.5e-69 265.0 380 71.3
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.2e-68 264.6 367 71.1
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.1e-68 263.8 389 68.1
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.8e-67 260.8 380 70.5
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.0e-67 260.0 390 71.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.0e-67 259.6 384 69.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.8e-67 258.8 384 65.4
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 8.9e-67 258.5 386 68.7
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.4e-66 256.5 382 70.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.7e-66 255.8 385 66.0
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 7.5e-66 255.4 383 64.0
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.7e-65 254.2 408 65.0
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.7e-65 254.2 381 67.5
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 2.8e-65 253.4 409 60.6
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 3.7e-65 253.1 384 65.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.9e-65 252.7 383 62.4
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.3e-65 251.9 383 64.0
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 8.3e-65 251.9 380 73.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.4e-64 251.1 385 68.3
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-64 251.1 384 69.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.4e-64 251.1 389 63.2
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.4e-64 251.1 383 66.3
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.4e-64 250.4 384 62.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.4e-64 250.4 381 66.9
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 4.1e-64 249.6 383 65.5
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.2e-63 248.1 385 65.2
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.6e-63 247.7 382 62.6
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.6e-63 247.7 385 69.1
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 3.5e-63 246.5 384 70.3
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 4.5e-63 246.1 388 63.7
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 4.5e-63 246.1 386 69.9
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 7.8e-63 245.4 384 70.1
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.7e-62 244.2 387 66.4
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.7e-62 244.2 381 71.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.9e-62 243.4 386 65.8
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.9e-62 243.4 387 66.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.9e-62 243.0 317 72.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 3.9e-62 243.0 383 63.4
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.1e-61 241.5 386 63.2
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.1e-61 241.5 384 65.4
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.5e-61 241.1 387 69.5
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.3e-61 240.0 320 70.9
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.3e-61 240.0 383 70.8
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 3.3e-61 240.0 385 60.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 4.3e-61 239.6 382 70.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.3e-61 239.6 381 70.6
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 9.5e-61 238.4 383 66.3
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.2e-60 238.0 382 70.7
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.8e-60 236.9 377 68.7
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 3.6e-60 236.5 351 66.7
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 4.7e-60 236.1 383 63.2
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.0e-59 235.0 385 64.4
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-59 234.6 406 62.3
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.8e-59 234.2 379 67.0
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 3.1e-59 233.4 318 71.4
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.0e-59 233.0 385 68.3
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.5e-58 231.1 394 63.7
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.0e-58 230.7 394 63.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 3.4e-58 229.9 386 66.1
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 7.5e-58 228.8 390 68.7
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 7.5e-58 228.8 385 62.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 7.5e-58 228.8 383 65.8
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 9.8e-58 228.4 390 60.5
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-57 228.0 385 60.0
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.2e-57 227.3 391 61.4
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.4e-57 225.7 321 69.2
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.6e-55 221.1 317 67.5
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.0e-55 220.7 318 67.3
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.7e-55 220.3 392 63.0
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 3.5e-55 219.9 318 67.6
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.3e-54 218.0 389 60.2
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.3e-54 217.2 393 65.6
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.3e-54 217.2 317 68.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.0e-54 216.9 393 65.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.5e-53 213.8 187 59.9
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 4.3e-53 213.0 384 66.7
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 4.3e-53 213.0 390 58.2
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 9.5e-53 211.8 386 66.3
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.2e-52 211.5 392 65.8
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.8e-52 210.3 329 66.3
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 8.0e-52 208.8 383 58.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-51 208.4 390 58.2
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-51 208.4 390 58.2
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.1e-51 208.4 390 58.2
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-51 206.8 384 65.9
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.8e-51 205.7 391 60.6
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 5.8e-50 202.6 390 57.7
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 5.8e-50 202.6 390 57.7
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.8e-47 192.2 390 55.1
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.5e-45 188.0 262 75.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.6e-44 184.5 386 64.2
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.6e-44 183.3 278 82.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.0e-43 179.9 286 67.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.4e-40 170.6 386 60.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 3.2e-40 170.2 198 50.0
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.6e-39 167.9 391 51.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 6.0e-39 166.0 318 41.2
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 7.8e-39 165.6 400 55.2
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.0e-38 165.2 331 64.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 6.6e-38 162.5 194 49.0
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.5e-37 161.4 389 60.9
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.5e-37 161.4 378 60.1
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.3e-37 160.2 389 60.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.3e-37 160.2 389 60.7
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 4.7e-36 156.4 374 61.8
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.1e-35 153.7 399 54.1
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 5.8e-34 149.4 257 73.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 2.9e-33 147.1 387 39.8
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.4e-32 144.8 283 68.2
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 3.2e-32 143.7 403 56.1
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.4e-32 142.9 394 48.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.4e-32 142.9 394 45.4
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.1e-31 141.0 338 50.9
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 3.5e-31 140.2 166 50.0
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.3e-29 133.7 330 53.3
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 5.6e-29 132.9 250 66.4
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.3e-29 132.5 125 56.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.6e-26 124.0 403 55.8
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.9e-25 120.6 246 81.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 2.2e-17 94.4 248 58.1
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.9e-16 91.3 116 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 3.2e-16 90.5 191 32.5
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.7e-15 87.4 100 54.0
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 4.6e-15 86.7 157 34.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.9e-15 85.9 101 51.5
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.0e-14 85.5 119 54.6
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.1e-13 82.0 171 38.0
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.8e-11 74.7 110 37.3
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.4e-11 74.3 87 50.6
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.5e-08 64.3 109 58.7
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 5.5e-08 63.2 64 50.0
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-07 62.0 64 48.4
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.6e-07 61.6 50 60.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.9e-06 57.0 50 56.0
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 5.1e-06 56.6 41 63.4


User provided reference genes

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