Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.2e-225 783.9 416 100.0
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.2e-40 170.2 474 33.3
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 4.1e-35 153.3 458 32.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.3e-33 147.5 449 32.1
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 3.3e-32 143.7 414 34.5
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.1e-31 141.0 439 31.2
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 4.0e-30 136.7 405 31.4
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.3e-28 131.7 469 30.5
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.3e-28 131.7 461 29.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-28 131.3 424 30.9
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.7e-28 131.3 482 29.0
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.2e-28 131.0 449 29.8
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 4.9e-28 129.8 433 29.3
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.8e-27 127.9 473 30.0
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.8e-27 127.9 428 32.7
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.4e-27 127.5 469 29.0
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.2e-27 127.1 465 30.1
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 4.1e-27 126.7 444 28.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 5.4e-27 126.3 432 28.9
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 7.0e-27 125.9 474 29.5
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 9.2e-27 125.6 440 28.9
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-26 124.8 409 32.3
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.6e-26 124.8 455 31.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.5e-26 123.6 434 30.6
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 4.6e-26 123.2 421 30.2
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 5.9e-26 122.9 470 27.9
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.0e-25 122.1 371 31.3
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.3e-25 121.7 448 28.1
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 1.3e-25 121.7 429 29.6
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 6.6e-25 119.4 504 28.8
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.6e-25 119.0 441 30.4
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 8.6e-25 119.0 445 29.4
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 8.6e-25 119.0 425 32.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.1e-24 118.6 427 28.6
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-24 117.9 428 29.0
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-24 117.9 428 29.0
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 2.5e-24 117.5 405 29.4
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 2.5e-24 117.5 467 28.3
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 3.3e-24 117.1 431 30.6
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 3.3e-24 117.1 422 31.8
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-24 116.7 412 29.1
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 5.6e-24 116.3 407 30.0
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.5e-24 115.5 426 26.8
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.2e-23 115.2 419 29.8
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-23 114.8 413 29.3
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-23 114.8 410 30.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.6e-23 113.6 473 28.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 4.7e-23 113.2 441 29.0
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.2e-23 112.8 422 29.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 6.2e-23 112.8 461 29.3
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 6.2e-23 112.8 418 30.6
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-22 112.1 409 29.6
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-22 111.7 407 30.2
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.4e-22 111.7 425 28.2
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.8e-22 111.3 449 27.2
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.1e-22 110.5 450 27.3
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.1e-22 110.5 495 26.9
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.1e-22 110.5 403 28.0
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 4.0e-22 110.2 279 32.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 5.2e-22 109.8 345 32.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 5.2e-22 109.8 417 27.8
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 6.8e-22 109.4 414 29.5
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 8.9e-22 109.0 424 29.0
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-21 107.8 416 28.8
DCAR_000175 Daucus carota HOM05D033909 ORTHO05D005159 2.0e-21 107.8 379 31.4
DCAR_000842 Daucus carota HOM05D033909 ORTHO05D005159 2.0e-21 107.8 379 31.4
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.0e-21 107.8 408 28.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 2.0e-21 107.8 449 28.3
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.8e-21 106.3 381 28.9
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 7.5e-21 105.9 418 29.7
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 7.5e-21 105.9 274 32.8
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 9.8e-21 105.5 405 28.9
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.8e-21 105.5 441 28.1
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.3e-20 105.1 460 28.5
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.2e-20 104.4 436 29.1
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 4.9e-20 103.2 418 31.6
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 4.9e-20 103.2 404 28.2
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 4.9e-20 103.2 413 29.3
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-19 102.1 402 28.9
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-19 102.1 402 28.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.1e-19 102.1 430 28.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 1.1e-19 102.1 416 29.8
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.9e-19 101.3 300 34.7
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.9e-19 101.3 433 27.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.4e-19 100.9 454 29.5
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.2e-19 100.5 432 27.8
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 5.4e-19 99.8 202 39.6
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 7.0e-19 99.4 454 29.3
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 9.2e-19 99.0 414 29.7
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.6e-18 98.2 190 37.4
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-18 98.2 407 27.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.6e-18 98.2 407 27.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 3.5e-18 97.1 422 27.3
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.5e-18 97.1 425 26.4
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 4.6e-18 96.7 477 26.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 6.0e-18 96.3 445 27.2
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.3e-17 95.1 196 37.8
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.7e-17 94.7 487 29.2
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.3e-17 94.4 472 26.3
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.9e-17 93.6 400 28.5
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 5.0e-17 93.2 323 29.1
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 8.6e-17 92.4 400 27.0
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.5e-16 90.9 399 27.8
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 3.3e-16 90.5 165 38.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.3e-16 90.5 428 29.4
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 4.3e-16 90.1 404 30.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.3e-16 90.1 175 38.9
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 9.5e-16 89.0 397 30.0
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 9.5e-16 89.0 404 30.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.6e-15 88.2 420 26.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.8e-15 87.4 405 25.9
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.6e-15 87.0 321 29.0
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 4.7e-15 86.7 192 35.9
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 4.7e-15 86.7 188 37.2
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 8.1e-15 85.9 404 27.0
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 8.1e-15 85.9 442 28.5
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.1e-14 84.0 182 36.3
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 4.0e-14 83.6 180 36.1
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.0e-14 83.6 313 29.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 4.0e-14 83.6 399 28.6
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 5.2e-14 83.2 268 32.5
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 6.8e-14 82.8 221 32.6
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.2e-13 82.0 456 26.3
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-13 82.0 402 24.4
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.5e-13 81.6 398 27.1
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 2.0e-13 81.3 181 35.4
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.6e-13 80.9 313 30.4
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.4e-13 80.5 399 29.6
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 5.8e-13 79.7 290 29.0
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.8e-13 79.7 272 28.7
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 9.9e-13 79.0 182 37.9
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 9.9e-13 79.0 429 25.2
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.3e-12 78.6 175 36.6
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 4.9e-12 76.6 316 27.5
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-11 75.1 316 27.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-11 74.7 402 26.9
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.9e-11 74.7 400 26.5
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.4e-11 74.3 316 27.8
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.4e-11 74.3 71 53.5
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 2.4e-11 74.3 400 25.2
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-11 73.9 309 30.1
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 3.2e-11 73.9 185 34.1
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 9.2e-11 72.4 179 32.4
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.1e-10 71.2 61 60.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.5e-10 70.5 196 31.1
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-09 68.9 188 33.0
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.7e-09 68.2 64 53.1
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 2.3e-09 67.8 440 27.0
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 5.1e-09 66.6 430 23.7
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 8.6e-09 65.9 163 38.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.5e-08 65.1 177 32.2
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 4.3e-08 63.5 398 24.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 5.6e-08 63.2 172 32.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 5.6e-08 63.2 172 32.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-07 62.0 448 27.7
DCAR_005660 Daucus carota HOM05D033909 ORTHO05D175772 4.7e-07 60.1 146 32.2
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 6.2e-07 59.7 180 31.1
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 1.8e-06 58.2 311 26.0
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 5.2e-06 56.6 148 32.4


User provided reference genes

Program Settings