Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.6e-255 885.6 445 100.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 3.5e-181 638.6 448 71.2
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.2e-179 631.7 449 70.2
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.8e-177 624.0 449 70.2
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 8.8e-177 624.0 449 69.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.2e-175 619.4 449 69.9
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.5e-173 612.1 449 69.3
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.1e-171 607.1 446 68.2
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 2.5e-171 605.9 451 67.6
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.5e-171 605.9 448 67.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.2e-171 605.1 448 68.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.1e-170 602.8 445 67.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.7e-170 602.4 447 68.2
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.7e-170 602.4 451 67.2
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.8e-169 599.7 451 67.4
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.0e-169 599.0 450 67.3
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.0e-169 598.6 448 66.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.2e-168 597.0 451 67.0
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.2e-168 597.0 446 66.6
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.2e-168 597.0 446 66.8
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 7.5e-168 594.3 447 67.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 9.7e-168 594.0 446 66.8
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.3e-167 593.6 450 66.0
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-167 593.6 451 66.3
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-167 592.4 449 67.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-166 590.1 442 66.5
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.8e-166 589.7 446 66.1
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 7.0e-166 587.8 446 65.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 7.0e-166 587.8 448 65.8
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 9.1e-166 587.4 440 65.7
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 9.1e-166 587.4 432 68.3
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.2e-165 587.0 446 66.1
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.2e-165 587.0 449 66.4
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 2.7e-165 585.9 447 66.0
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 7.7e-165 584.3 440 65.5
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.0e-164 583.9 452 65.3
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.7e-164 583.2 447 66.0
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.7e-164 583.2 450 64.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 8.5e-164 580.9 439 67.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 8.5e-164 580.9 450 64.4
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.1e-163 580.5 448 64.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.5e-163 580.1 449 65.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.2e-163 578.9 449 65.7
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.2e-162 577.0 447 65.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.7e-162 575.1 452 64.8
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.0e-161 572.4 439 63.6
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.2e-160 570.5 431 65.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.6e-160 569.3 452 64.2
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.4e-160 568.9 438 64.2
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 7.5e-160 567.8 441 63.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 6.3e-159 564.7 444 65.1
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 6.3e-159 564.7 434 63.1
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 412 69.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.4e-158 561.6 433 62.8
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.0e-158 561.2 449 64.4
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 7.0e-158 561.2 437 63.2
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.0e-157 559.7 411 66.4
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.0e-157 559.7 449 64.4
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.5e-157 558.9 435 63.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.3e-156 557.0 436 64.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.7e-156 556.6 435 63.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.7e-156 556.6 411 67.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.8e-156 555.4 433 63.0
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 8.6e-156 554.3 431 63.3
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-155 553.9 449 63.0
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.5e-155 553.5 395 69.4
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 4.2e-155 552.0 438 62.1
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 5.5e-155 551.6 437 65.0
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.2e-154 550.4 438 62.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 3.6e-154 548.9 448 61.6
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.0e-153 547.4 452 61.5
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 6.8e-153 544.7 435 62.8
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-152 543.5 434 63.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.6e-152 542.7 409 63.8
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.8e-151 539.3 476 61.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.7e-151 538.9 440 63.2
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 6.3e-151 538.1 448 63.2
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.8e-150 536.6 435 61.8
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 3.1e-150 535.8 450 62.2
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 3.5e-149 532.3 377 69.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 5.0e-148 528.5 430 61.9
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.5e-147 526.9 409 65.8
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 5.6e-147 525.0 447 59.7
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 5.6e-147 525.0 447 59.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 9.5e-147 524.2 445 61.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 3.6e-146 522.3 439 60.4
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 6.1e-146 521.5 447 61.5
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.0e-145 520.8 434 61.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 5.2e-145 518.5 349 72.5
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.4e-144 515.8 453 61.1
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 5.8e-144 515.0 436 63.1
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.7e-143 512.3 381 66.7
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.9e-143 511.9 455 60.0
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.9e-142 510.0 437 59.3
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.4e-142 509.6 442 61.5
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 4.1e-142 508.8 450 61.1
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 9.2e-142 507.7 443 61.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.0e-141 506.5 455 58.5
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.5e-141 505.8 452 59.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.0e-140 504.2 447 60.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.3e-140 503.8 447 58.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.7e-140 503.4 456 60.7
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.7e-140 503.4 456 60.7
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 3.3e-139 499.2 434 59.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 4.3e-139 498.8 439 60.6
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.6e-138 495.7 430 60.9
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-137 494.2 439 60.8
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-137 494.2 439 60.8
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.4e-137 493.8 450 59.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.1e-137 492.7 452 58.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.2e-137 491.9 452 58.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 5.2e-137 491.9 440 56.6
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.3e-135 487.3 438 56.4
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.7e-135 486.9 352 68.5
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.9e-135 486.1 444 59.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.1e-134 484.2 352 66.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 2.4e-134 483.0 440 56.1
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 5.4e-134 481.9 368 67.1
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.2e-134 481.1 348 67.5
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.3e-132 476.5 441 58.0
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 8.6e-132 474.6 380 60.3
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.6e-131 471.9 415 57.6
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.1e-129 467.6 355 64.8
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 2.7e-117 426.4 321 65.1
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.6e-117 425.6 448 52.7
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.6e-115 417.9 344 59.9
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.2e-112 411.0 363 60.9
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.8e-106 389.8 379 55.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-102 377.1 328 58.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.9e-102 377.1 328 58.8
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.6e-93 345.9 391 48.3
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.1e-91 341.3 441 46.0
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 3.6e-77 293.1 240 58.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 6.3e-66 255.8 192 66.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.0e-63 248.4 249 53.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.8e-63 246.5 387 40.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.1e-61 240.7 149 74.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.2e-53 214.9 172 63.4
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.4e-52 211.5 260 47.3
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 4.4e-35 153.3 160 49.4
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.3e-34 149.1 109 67.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.0e-31 142.1 139 58.3
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.5e-30 138.3 110 67.3
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.6e-29 134.8 111 64.9
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 7.0e-25 119.4 100 59.0
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 4.1e-09 67.0 54 59.3
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 6.0e-08 63.2 54 51.9


User provided reference genes

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