Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 4.5e-143 512.7 699 100.0
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 1.9e-61 241.5 644 82.5
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.2e-57 228.0 678 73.2
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 7.1e-56 223.0 179 65.9
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 1.3e-54 218.8 197 55.8
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.3e-54 218.0 652 78.5
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 5.6e-53 213.4 196 57.7
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 1.6e-52 211.8 206 55.3
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.1e-52 211.5 636 79.2
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.1e-52 209.5 185 56.2
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 1.4e-51 208.8 644 79.8
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.8e-51 208.4 675 76.7
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 5.3e-51 206.8 675 76.7
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 7.6e-50 203.0 139 73.4
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 7.6e-50 203.0 644 79.3
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 4.9e-49 200.3 646 79.7
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 2.4e-48 198.0 146 69.2
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 5.4e-48 196.8 622 81.5
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.1e-48 196.4 149 66.4
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 9.3e-48 196.1 128 77.3
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.1e-47 194.9 191 56.0
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 6.0e-47 193.4 125 76.8
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 3.9e-46 190.7 201 52.7
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 6.7e-46 189.9 137 69.3
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 1.9e-45 188.3 254 42.5
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 9.6e-45 186.0 125 76.8
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 9.6e-45 186.0 151 64.9
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 2.8e-44 184.5 167 59.9
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 1.5e-42 178.7 150 61.3
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.0e-41 176.0 150 62.7
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 3.8e-41 174.1 148 61.5
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 3.8e-41 174.1 148 61.5
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.5e-40 171.4 138 59.4
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 3.2e-40 171.0 132 67.4
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 4.2e-40 170.6 115 75.7
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 5.5e-40 170.2 132 67.4
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 5.5e-40 170.2 134 66.4
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 9.3e-40 169.5 144 61.1
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.2e-39 169.1 132 67.4
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 2.7e-39 167.9 132 65.9
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.6e-39 167.2 140 60.0
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 4.6e-39 167.2 128 68.0
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 7.9e-39 166.4 146 60.3
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 7.9e-39 166.4 144 59.7
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 7.9e-39 166.4 146 59.6
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 7.9e-39 166.4 146 60.3
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 7.9e-39 166.4 148 60.8
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 1.0e-38 166.0 134 64.2
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.3e-38 165.6 139 61.2
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.3e-38 165.6 141 61.7
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.8e-38 165.2 145 63.4
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.3e-38 164.9 138 58.0
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 3.0e-38 164.5 140 61.4
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 3.0e-38 164.5 132 63.6
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 3.0e-38 164.5 132 63.6
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 3.0e-38 164.5 140 61.4
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 3.9e-38 164.1 193 50.8
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 5.1e-38 163.7 145 60.0
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 8.7e-38 162.9 130 66.2
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.1e-37 162.5 132 62.9
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 1.9e-37 161.8 124 64.5
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 1.9e-37 161.8 147 60.5
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 4.3e-37 160.6 147 60.5
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 5.7e-37 160.2 171 52.0
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 5.7e-37 160.2 132 63.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 5.7e-37 160.2 132 63.6
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.3e-36 159.1 196 45.4
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 1.6e-36 158.7 128 63.3
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 2.8e-36 157.9 139 60.4
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 4.8e-36 157.1 171 51.5
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 4.8e-36 157.1 171 51.5
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 6.2e-36 156.8 124 63.7
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.1e-35 156.0 140 58.6
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.4e-35 154.8 138 57.2
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 3.1e-35 154.5 128 60.2
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 9.0e-35 152.9 172 48.3
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 9.0e-35 152.9 117 66.7
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 9.0e-35 152.9 137 58.4
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 9.0e-35 152.9 173 48.0
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.5e-34 152.1 118 64.4
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.5e-34 152.1 134 59.7
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 2.0e-34 151.8 166 54.2
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 2.6e-34 151.4 155 53.5
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 3.4e-34 151.0 118 64.4
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.5e-34 150.6 129 63.6
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 5.8e-34 150.2 138 57.2
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.5e-32 144.8 112 63.4
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.5e-32 144.8 184 45.1
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 4.2e-32 144.1 149 54.4
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 7.1e-32 143.3 135 54.1
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 6.1e-31 140.2 175 46.3
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.0e-30 139.4 185 47.0
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 1.3e-30 139.0 136 55.1
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 5.1e-30 137.1 142 53.5
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.1e-27 129.4 113 59.3
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 2.4e-27 128.3 140 52.1
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 4.2e-24 117.5 76 68.4
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 7.2e-24 116.7 96 60.4
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 6.1e-23 113.6 144 46.5
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.8e-22 112.1 75 69.3
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.0e-22 111.3 74 66.2
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.9e-22 110.9 96 53.1
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 8.8e-22 109.8 76 64.5
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 3.3e-21 107.8 134 47.8
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 1.8e-19 102.1 159 39.6
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.5e-18 99.0 193 32.6
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.9e-17 94.7 186 31.7
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 1.8e-14 85.5 163 35.0
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 1.1e-13 82.8 65 61.5
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.3e-13 81.3 57 61.4
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.3e-12 79.3 52 67.3
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 4.8e-12 77.4 67 55.2
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 8.2e-12 76.6 74 51.4
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 8.2e-12 76.6 74 51.4
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 9.4e-08 63.2 94 29.8
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 5.2e-06 57.4 79 31.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 5.2e-06 57.4 116 31.0
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.7e-06 57.0 104 33.7


User provided reference genes

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