Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.2e-197 693.0 347 100.0
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.7e-104 381.3 348 59.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.0e-103 380.9 351 58.7
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-103 380.6 353 59.2
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.3e-102 375.9 336 61.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.5e-102 375.2 349 59.9
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.2e-102 374.8 336 61.3
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.2e-101 374.0 348 59.8
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.2e-101 374.0 350 57.4
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 2.8e-101 372.9 347 57.9
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 3.6e-101 372.5 350 59.1
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 6.1e-101 371.7 334 59.9
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.8e-100 370.2 352 57.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.3e-100 369.8 341 58.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 2.3e-100 369.8 352 56.8
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.3e-100 369.8 329 60.5
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 3.0e-100 369.4 338 59.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 4.0e-100 369.0 349 57.3
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 8.9e-100 367.9 352 58.5
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 8.9e-100 367.9 354 56.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.5e-99 367.1 350 57.7
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 2.0e-99 366.7 336 60.4
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 5.7e-99 365.2 213 84.0
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.7e-98 363.6 329 60.8
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.7e-98 363.6 213 84.0
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.7e-98 363.6 350 56.6
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.2e-98 363.2 355 58.6
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.8e-98 362.8 352 57.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.7e-98 362.5 336 59.5
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.9e-98 362.1 346 58.1
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 6.3e-98 361.7 334 58.4
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.1e-97 360.9 352 55.4
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-97 360.5 351 57.0
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.8e-97 360.1 352 55.4
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 2.4e-97 359.8 347 57.6
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 2.4e-97 359.8 356 55.9
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.2e-97 359.4 330 59.7
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 3.2e-97 359.4 350 56.3
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.1e-97 359.0 345 56.2
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 5.4e-97 358.6 352 55.4
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.4e-97 358.6 354 56.5
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 7.0e-97 358.2 333 58.0
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 9.2e-97 357.8 351 56.4
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 9.2e-97 357.8 336 58.0
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.6e-96 357.1 354 56.2
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.6e-96 357.1 347 56.8
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.6e-96 357.1 213 80.3
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.6e-96 357.1 231 77.5
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.6e-96 357.1 356 55.3
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 2.7e-96 356.3 351 57.3
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.5e-96 355.9 219 79.9
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.5e-96 355.9 213 80.8
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.5e-96 355.5 350 56.0
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 4.5e-96 355.5 356 55.6
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 5.9e-96 355.1 360 54.2
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.0e-95 354.4 330 59.7
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 6.6e-95 351.7 213 81.2
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 6.6e-95 351.7 347 55.0
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.5e-94 350.5 345 55.9
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.3e-94 349.4 345 55.4
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 4.3e-94 349.0 319 58.6
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 7.3e-94 348.2 353 55.0
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 7.3e-94 348.2 214 79.4
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 7.3e-94 348.2 354 55.4
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.2e-93 347.4 338 55.6
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.1e-93 346.7 213 80.3
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 3.6e-93 345.9 213 79.8
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 4.7e-93 345.5 373 53.1
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.7e-93 345.5 348 53.7
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 8.0e-93 344.7 346 54.3
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.0e-92 344.4 305 60.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.0e-92 344.4 355 55.2
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.3e-92 343.2 341 55.4
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 2.3e-92 343.2 341 55.4
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.3e-92 343.2 352 55.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 3.1e-92 342.8 315 59.7
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.4e-91 339.3 213 78.9
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.8e-91 338.6 213 76.5
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 9.8e-91 337.8 336 56.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.3e-90 337.4 215 75.8
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.3e-90 337.4 316 58.9
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.9e-90 336.3 213 76.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 3.7e-90 335.9 213 78.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.9e-90 335.5 353 54.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 8.3e-90 334.7 316 58.9
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.4e-89 334.0 333 55.6
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.2e-89 332.8 354 51.7
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.1e-89 332.4 353 52.4
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.1e-89 332.4 351 52.4
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 9.2e-89 331.3 265 64.9
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.2e-88 330.9 353 53.8
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 2.0e-88 330.1 331 55.9
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 7.8e-88 328.2 345 54.2
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 5.0e-87 325.5 346 51.7
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 8.6e-87 324.7 335 52.8
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-86 324.3 213 74.2
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.9e-86 323.6 213 72.3
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.3e-86 322.8 213 74.2
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 7.3e-86 321.6 342 51.2
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 9.5e-86 321.2 213 72.8
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 9.5e-86 321.2 420 47.6
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.2e-85 320.9 213 73.7
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 4.7e-85 318.9 213 74.2
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 8.0e-85 318.2 339 51.3
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-84 317.8 346 50.6
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.1e-84 316.2 360 49.7
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 4.0e-84 315.8 213 72.3
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 5.2e-84 315.5 347 50.7
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.2e-84 315.5 231 69.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 6.8e-84 315.1 213 72.3
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 6.8e-84 315.1 213 72.3
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 6.8e-84 315.1 213 73.7
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-83 314.3 347 51.3
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.2e-83 314.3 360 50.0
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-83 313.5 213 71.8
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.6e-83 313.2 369 49.3
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 4.4e-83 312.4 336 53.9
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 9.8e-83 311.2 213 70.9
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.9e-82 309.7 204 73.5
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.4e-82 308.5 213 70.4
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 7.1e-81 305.1 218 67.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.2e-80 304.3 224 69.2
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 3.5e-80 302.8 336 50.9
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 3.0e-79 299.7 213 67.6
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.9e-78 297.0 347 51.3
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.1e-76 289.7 361 48.5
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 5.2e-76 288.9 329 52.3
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.8e-76 288.5 350 48.9
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.5e-75 287.3 184 78.8
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 1.3e-74 284.3 213 65.3
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 4.1e-73 279.3 205 64.4
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.1e-73 279.3 282 55.3
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 9.2e-73 278.1 196 73.5
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.2e-72 277.7 350 47.1
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.0e-72 275.4 212 63.2
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.1e-70 271.2 212 64.2
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.3e-70 268.5 217 61.3
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.8e-69 266.5 282 52.5
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.7e-69 265.8 212 62.7
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 4.4e-67 259.2 230 56.1
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.4e-65 253.4 336 46.1
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.1e-62 244.6 212 57.1
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 4.3e-62 242.7 286 46.9
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.5e-59 234.2 211 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 5.8e-59 232.3 213 53.1
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 5.8e-59 232.3 147 79.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.9e-58 229.9 207 61.8
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.1e-56 223.8 147 73.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 6.6e-55 218.8 117 88.0
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.6e-54 215.7 187 62.0
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.9e-49 200.7 208 49.0
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.7e-48 196.8 213 48.8
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.1e-47 192.6 166 63.3
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.4e-43 179.9 122 73.0
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.3e-41 171.8 91 87.9
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.4e-36 157.1 148 58.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 2.4e-36 157.1 105 72.4
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 5.3e-36 156.0 100 78.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.8e-29 133.7 84 81.0
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.0e-26 125.2 118 55.9
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.0e-26 125.2 118 55.9
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 3.8e-26 123.2 219 36.5
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.8e-23 114.4 68 77.9
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 4.3e-22 109.8 82 69.5
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 5.7e-22 109.4 70 71.4
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 9.7e-22 108.6 160 39.4
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.5e-19 101.3 240 32.1
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.5e-17 92.8 64 73.4
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.0e-15 87.0 85 56.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.5e-14 84.7 82 52.4
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 7.4e-14 82.4 99 44.4
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.9e-09 67.8 34 73.5
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.0e-07 62.0 123 39.8
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 4.0e-07 60.1 209 26.8
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 5.2e-07 59.7 38 76.3


User provided reference genes

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