Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 4.5e-126 456.1 229 100.0
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 2.0e-57 228.0 182 64.8
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.7e-56 224.9 213 52.6
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 2.9e-56 224.2 201 54.7
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 3.2e-55 220.7 213 52.6
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 7.1e-55 219.5 224 50.9
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 5.1e-53 213.4 203 54.7
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.3e-52 210.7 229 52.0
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.3e-52 210.7 229 52.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 9.6e-52 209.1 232 51.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 1.3e-51 208.8 193 60.6
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 8.4e-48 196.1 188 53.2
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 4.2e-47 193.7 195 52.3
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 7.1e-47 193.0 226 48.7
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 9.3e-47 192.6 181 57.5
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 4.6e-46 190.3 238 48.7
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 6.7e-45 186.4 192 51.6
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.9e-44 184.9 239 46.0
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 7.4e-44 183.0 187 49.7
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 7.4e-44 183.0 187 49.7
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 1.6e-43 181.8 230 48.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 5.3e-42 176.8 186 51.1
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 6.9e-42 176.4 229 46.3
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 9.0e-42 176.0 237 43.5
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 9.0e-42 176.0 168 58.3
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 1.2e-41 175.6 220 45.0
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.2e-41 175.6 228 43.9
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 9.9e-41 172.6 212 46.2
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 9.9e-41 172.6 219 47.5
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 9.9e-41 172.6 237 41.4
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.3e-40 172.2 185 49.2
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 1.7e-40 171.8 176 50.0
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.2e-40 171.4 229 45.0
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 6.4e-40 169.9 240 42.1
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 1.4e-39 168.7 225 43.1
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 2.5e-39 167.9 200 46.0
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 2.5e-39 167.9 219 45.2
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 5.5e-39 166.8 187 45.5
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 7.1e-39 166.4 183 46.4
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 9.3e-39 166.0 180 50.0
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.7e-38 164.5 187 46.0
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 4.6e-38 163.7 200 47.5
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 6.0e-38 163.3 202 42.1
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 6.0e-38 163.3 224 42.9
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 6.0e-38 163.3 209 42.6
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.0e-37 162.5 201 44.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 2.3e-37 161.4 188 43.6
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.5e-36 158.7 196 43.9
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.3e-35 155.6 204 48.0
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.3e-35 155.6 222 42.8
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.3e-35 155.6 221 40.7
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 2.1e-35 154.8 220 40.5
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 3.7e-35 154.1 229 42.4
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 4.8e-35 153.7 188 43.6
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 6.2e-35 153.3 207 42.5
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 8.2e-35 152.9 177 45.8
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.4e-34 152.1 189 43.4
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.4e-34 152.1 198 42.4
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.8e-34 151.8 192 42.7
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.8e-34 151.8 192 42.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.4e-34 151.4 185 44.3
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 5.3e-34 150.2 189 42.9
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 7.6e-33 146.4 188 42.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.0e-32 146.0 241 41.9
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.8e-32 144.1 229 40.6
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 8.4e-32 142.9 221 38.9
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 3.2e-31 141.0 209 38.8
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 3.2e-31 141.0 189 38.6
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 5.5e-31 140.2 190 41.1
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 3.5e-30 137.5 205 37.1
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 4.6e-30 137.1 145 47.6
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 4.6e-30 137.1 188 41.5
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 2.3e-29 134.8 187 42.8
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.5e-28 131.3 200 37.5
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 9.7e-28 129.4 166 41.0
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.6e-27 128.6 200 40.5
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.1e-26 125.9 185 41.1
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.4e-26 125.6 194 36.6
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.4e-26 124.8 183 41.0
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 6.9e-26 123.2 183 41.0
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 6.9e-26 123.2 153 43.1
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 9.0e-26 122.9 156 42.3
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 9.0e-26 122.9 217 36.9
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.6e-25 121.3 159 41.5
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 4.5e-25 120.6 209 36.8
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 1.3e-24 119.0 204 36.8
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 3.6e-22 110.9 203 36.9
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 1.7e-19 102.1 163 36.8
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 1.2e-17 95.9 78 60.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 1.5e-17 95.5 166 35.5
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 1.2e-14 85.9 157 36.9
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 2.3e-13 81.6 113 41.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.0e-13 81.3 169 30.8
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.2e-11 75.1 51 68.6
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 4.8e-11 73.9 50 68.0
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 6.3e-11 73.6 50 64.0
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 8.2e-11 73.2 50 64.0
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 1.1e-10 72.8 201 27.4
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 1.8e-10 72.0 50 64.0
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.4e-10 71.6 69 50.7
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 3.1e-10 71.2 206 28.2
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 7.0e-10 70.1 61 55.7
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 9.1e-10 69.7 206 28.2
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 9.1e-10 69.7 181 32.6
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 1.5e-09 68.9 190 28.9
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.5e-09 68.9 218 24.3
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 2.0e-09 68.6 190 28.9
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.0e-09 68.6 206 27.7
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 2.6e-09 68.2 197 29.9
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 3.5e-09 67.8 194 24.2
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 4.5e-09 67.4 206 27.7
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.0e-08 66.2 177 27.7
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.3e-08 65.9 57 52.6
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 1.7e-08 65.5 208 26.0
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 2.2e-08 65.1 204 27.5
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 2.9e-08 64.7 206 26.2
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 2.9e-08 64.7 206 26.2
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 2.9e-08 64.7 177 26.6
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.9e-08 64.7 45 64.4
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 3.8e-08 64.3 207 26.1
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 5.0e-08 63.9 176 27.8
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 5.0e-08 63.9 206 27.2
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 5.0e-08 63.9 204 27.9
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 6.5e-08 63.5 218 23.4
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 8.5e-08 63.2 206 26.7
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 8.5e-08 63.2 206 26.7
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 8.5e-08 63.2 48 60.4
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 1.1e-07 62.8 197 27.4
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 1.4e-07 62.4 187 26.7
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 1.9e-07 62.0 197 25.9
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 1.9e-07 62.0 201 26.4
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 2.5e-07 61.6 164 26.8
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 4.2e-07 60.8 213 26.8
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 4.2e-07 60.8 188 26.6
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 4.2e-07 60.8 234 27.8
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 5.5e-07 60.5 197 24.4
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 5.5e-07 60.5 133 31.6
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 5.5e-07 60.5 177 28.8
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 7.2e-07 60.1 187 23.0
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 7.2e-07 60.1 200 25.5
Solyc10g051010.3 Solanum lycopersicum HOM05D007675 ORTHO05D009699 7.2e-07 60.1 235 27.7
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.2e-06 59.3 205 29.3
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 1.2e-06 59.3 233 27.0
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 1.6e-06 58.9 219 26.0
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 2.1e-06 58.5 209 26.8
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 2.1e-06 58.5 175 24.0
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 2.7e-06 58.2 197 25.9
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 2.7e-06 58.2 207 23.2
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 2.7e-06 58.2 157 29.3
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 3.6e-06 57.8 183 26.8
Nitab4.5_0000876g0030 Nicotiana tabacum HOM05D007675 ORTHO05D009699 4.7e-06 57.4 193 26.4
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 4.7e-06 57.4 181 28.7
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 6.1e-06 57.0 181 24.3
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 6.1e-06 57.0 175 23.4
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 8.0e-06 56.6 191 24.6
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 8.0e-06 56.6 181 24.3
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 8.0e-06 56.6 181 24.3
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 8.0e-06 56.6 165 26.1


User provided reference genes

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