Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.8e-94 348.6 175 100.0
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 8.5e-75 283.9 171 81.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.4e-72 276.6 173 79.2
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-71 273.1 173 78.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.0e-71 272.7 173 78.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-70 270.0 173 77.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-70 270.0 173 77.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 8.2e-70 267.3 172 75.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.1e-69 266.9 152 84.2
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.8e-69 266.2 171 76.0
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.8e-69 266.2 171 78.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.8e-69 266.2 171 76.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.1e-69 265.0 173 75.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.3e-69 264.6 170 77.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 9.1e-69 263.8 171 76.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-68 263.5 171 76.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.2e-68 263.5 172 73.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-68 262.7 171 75.4
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.0e-68 262.7 170 76.5
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.0e-68 262.7 177 73.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.0e-68 262.7 173 75.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.6e-68 262.3 171 74.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.5e-68 261.9 172 73.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-68 261.9 172 72.7
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.5e-68 261.9 173 75.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.9e-68 261.2 172 73.8
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.9e-68 261.2 172 73.8
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.9e-68 261.2 172 73.8
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.7e-68 260.8 172 75.0
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 7.7e-68 260.8 172 73.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.0e-67 260.4 172 74.4
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.3e-67 260.0 172 73.8
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-67 260.0 172 72.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-67 260.0 162 79.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.7e-67 259.6 172 73.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.7e-67 259.6 172 73.8
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.7e-67 259.6 172 74.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.2e-67 259.2 172 72.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.9e-67 258.8 171 74.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-67 258.8 172 73.8
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-67 258.8 172 72.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.8e-67 258.5 172 73.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.8e-67 258.5 172 71.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 3.8e-67 258.5 172 72.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 5.0e-67 258.1 171 73.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.0e-67 258.1 172 71.5
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.0e-67 258.1 172 73.3
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.0e-67 258.1 170 72.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-66 256.5 172 73.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.9e-66 256.1 172 72.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.9e-66 256.1 173 71.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.9e-66 256.1 172 71.5
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.5e-66 255.8 172 72.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.5e-66 255.8 171 72.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.5e-66 255.8 171 72.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.5e-66 255.8 172 72.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.2e-66 255.4 172 72.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.2e-66 255.4 171 72.5
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.2e-66 255.4 171 72.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.2e-66 255.4 166 75.3
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.2e-66 255.4 172 73.3
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.2e-66 255.0 172 72.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.2e-66 255.0 172 72.7
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.5e-66 254.6 172 71.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.5e-66 254.6 173 70.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.5e-66 254.6 172 72.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.4e-66 253.8 170 72.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.4e-66 253.8 172 72.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 9.4e-66 253.8 172 72.1
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.2e-65 253.4 172 71.5
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.2e-65 253.4 170 72.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-65 253.1 172 70.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-65 253.1 172 71.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.1e-65 252.7 172 72.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.1e-65 252.7 171 71.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-65 252.3 166 73.5
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-65 252.3 166 73.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.6e-65 251.9 172 70.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.6e-65 251.9 172 71.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 4.7e-65 251.5 173 72.8
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.7e-65 251.5 172 72.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 6.1e-65 251.1 173 72.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 8.0e-65 250.8 172 72.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 8.0e-65 250.8 168 71.4
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.0e-64 250.4 170 70.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.4e-64 250.0 172 70.3
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-64 250.0 172 69.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-64 250.0 167 73.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.8e-64 249.6 172 72.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.0e-64 248.8 172 70.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.0e-64 248.8 170 71.2
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 6.7e-64 247.7 172 70.9
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.0e-63 246.1 171 72.5
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.3e-63 245.4 171 69.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.3e-63 245.4 162 72.8
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.3e-62 243.4 174 70.1
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.8e-62 242.3 179 66.5
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.1e-61 240.4 172 69.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.4e-61 240.0 172 65.1
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.8e-61 239.6 167 69.5
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 4.1e-61 238.4 169 68.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.1e-61 238.4 173 69.4
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.3e-61 238.0 166 69.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.3e-61 238.0 164 70.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 7.0e-61 237.7 166 71.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-60 235.7 170 67.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.9e-60 234.6 166 69.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.7e-60 234.2 162 68.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.7e-59 233.0 163 68.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.2e-59 232.6 172 64.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.9e-59 232.3 173 67.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-59 232.3 171 69.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 6.5e-59 231.1 173 66.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.1e-58 230.3 172 65.7
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.1e-58 230.3 168 67.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.5e-58 229.9 163 68.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 5.5e-58 228.0 166 66.9
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.2e-57 226.9 176 65.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-57 226.5 171 64.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.6e-57 225.3 175 69.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.6e-57 225.3 173 65.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.7e-57 224.9 172 62.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.1e-57 224.6 168 63.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.0e-56 223.8 172 64.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-56 223.0 168 67.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-56 223.0 168 67.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.0e-56 221.9 165 66.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.2e-56 221.5 172 63.4
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-55 219.2 168 66.1
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.4e-55 218.4 133 78.2
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 7.5e-55 217.6 161 62.1
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.8e-55 217.2 168 65.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-54 216.9 174 60.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 8.3e-54 214.2 159 62.9
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.4e-53 212.6 162 61.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-53 212.6 158 64.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.4e-53 211.5 172 60.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-52 209.9 182 61.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-52 209.5 139 71.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.0e-51 207.2 162 61.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.7e-51 206.5 164 64.0
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-51 206.5 170 60.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.2e-51 206.1 166 59.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.8e-51 205.3 133 73.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.1e-49 199.5 161 64.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.7e-49 198.4 155 61.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.7e-49 198.4 140 73.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.4e-48 196.8 172 59.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 4.9e-46 188.3 161 59.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-45 187.2 136 70.6
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.4e-45 186.0 129 70.5
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.0e-44 183.0 129 67.4
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-44 182.6 166 56.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.0e-43 180.6 143 62.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.3e-43 179.5 142 57.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.6e-43 177.9 166 57.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.6e-43 177.6 161 61.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 5.6e-42 174.9 170 57.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.1e-41 172.9 129 65.1
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.6e-41 172.2 179 53.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-40 169.5 179 53.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.6e-39 166.0 179 52.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-36 156.4 116 70.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-34 149.8 106 70.8
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.9e-32 141.0 90 74.4
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.2e-29 131.0 138 44.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.5e-26 123.6 91 69.2
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 5.6e-26 121.7 93 61.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.4e-24 117.1 93 60.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 9.8e-23 110.9 73 67.1
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-20 103.6 172 39.0
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.0e-19 99.4 79 62.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.5e-12 75.9 154 39.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 6.0e-12 75.1 176 31.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.3e-11 73.2 53 66.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 52 61.5
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 8.1e-09 64.7 71 46.5
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.1e-08 64.3 180 30.6
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.0e-07 60.1 64 39.1


User provided reference genes

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