Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 8.0e-91 337.0 165 100.0
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.9e-77 292.0 164 87.2
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 7.7e-70 267.3 156 83.3
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.7e-61 239.6 162 71.6
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.6e-36 154.1 171 48.5
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.6e-33 146.0 186 44.1
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.9e-33 144.1 185 43.8
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 9.9e-33 144.1 174 43.1
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-31 140.6 175 42.9
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-31 140.6 175 43.4
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.4e-31 140.2 173 41.6
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.9e-31 139.8 186 41.9
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.2e-31 139.0 169 42.0
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.2e-31 138.7 173 44.5
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 7.1e-31 137.9 173 45.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.3e-31 137.5 186 41.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.1e-30 136.3 174 42.5
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.1e-30 136.3 170 43.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.5e-30 135.6 179 46.4
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 4.6e-30 135.2 177 44.6
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 4.6e-30 135.2 173 44.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 4.6e-30 135.2 173 44.5
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 7.8e-30 134.4 174 43.7
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 7.8e-30 134.4 172 45.3
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 7.8e-30 134.4 172 45.3
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-29 133.7 185 41.6
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.7e-29 133.3 172 43.0
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.7e-29 133.3 167 44.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-29 132.1 172 44.8
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 6.6e-29 131.3 175 45.1
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 6.6e-29 131.3 149 45.6
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 6.6e-29 131.3 174 43.7
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 8.7e-29 131.0 184 42.9
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.5e-28 130.2 180 42.2
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-28 129.8 174 43.1
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-28 129.8 174 43.1
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 3.3e-28 129.0 174 43.1
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 5.6e-28 128.3 178 41.0
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.8e-27 125.9 176 42.6
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 8.1e-27 124.4 172 37.2
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.1e-27 124.4 155 44.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.4e-26 123.6 173 41.6
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-26 122.9 175 41.7
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.1e-26 122.5 182 41.2
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 3.1e-26 122.5 171 39.8
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.1e-26 122.5 178 42.7
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.0e-26 122.1 177 40.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 5.3e-26 121.7 192 37.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 6.9e-26 121.3 191 38.2
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.9e-26 121.3 161 43.5
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.9e-26 121.3 161 43.5
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 6.9e-26 121.3 171 40.9
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 9.0e-26 120.9 181 43.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 9.0e-26 120.9 181 43.1
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.5e-25 120.2 163 42.3
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.0e-25 119.8 174 39.1
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.0e-25 119.8 172 41.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.0e-25 119.8 170 41.8
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 4.5e-25 118.6 169 39.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.5e-25 118.6 172 40.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 4.5e-25 118.6 172 41.3
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.3e-24 117.1 191 37.2
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-24 117.1 173 39.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.2e-24 116.3 176 38.6
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.2e-24 116.3 182 41.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.2e-24 116.3 162 39.5
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 4.9e-24 115.2 153 43.1
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 6.4e-24 114.8 172 40.1
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 8.4e-24 114.4 173 41.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.9e-23 113.2 177 39.0
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.4e-23 112.8 172 39.5
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.2e-23 112.5 176 38.6
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.2e-23 112.5 158 39.2
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.2e-23 112.1 172 40.1
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.2e-22 110.5 176 37.5
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.2e-22 110.5 172 39.5
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.2e-22 110.5 177 38.4
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-22 109.4 169 37.9
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 2.7e-22 109.4 166 37.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.7e-22 109.4 151 39.7
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 7.9e-22 107.8 185 36.8
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.9e-22 107.8 171 40.4
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.3e-21 107.1 172 41.9
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.8e-21 106.7 173 35.8
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.8e-21 106.7 165 40.0
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.0e-21 105.9 185 39.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.9e-21 105.5 169 36.7
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.9e-21 105.5 179 37.4
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.7e-21 104.4 175 38.9
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.9e-20 103.2 161 35.4
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.9e-20 103.2 161 35.4
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.9e-20 103.2 161 36.0
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.3e-20 102.4 151 38.4
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.3e-20 102.1 205 34.6
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 9.6e-20 100.9 189 34.4
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.3e-19 100.5 177 35.0
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.6e-19 100.1 161 34.8
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 4.8e-19 98.6 176 36.9
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 4.8e-19 98.6 159 37.1
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 6.2e-19 98.2 167 35.3
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.2e-19 98.2 171 33.9
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 8.1e-19 97.8 161 34.8
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.1e-18 97.4 167 35.3
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.4e-18 97.1 176 37.5
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-18 97.1 136 41.2
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.4e-18 97.1 172 34.3
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.4e-18 96.3 183 36.6
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 4.0e-18 95.5 171 33.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 5.3e-18 95.1 170 33.5
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.5e-17 93.6 172 33.7
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.5e-17 93.6 134 39.6
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.6e-17 92.8 171 33.3
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.6e-17 92.8 179 34.1
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 3.4e-17 92.4 163 31.9
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 4.5e-17 92.0 203 32.0
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 4.5e-17 92.0 203 32.0
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.5e-17 92.0 179 34.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 5.8e-17 91.7 176 34.7
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 7.6e-17 91.3 169 32.0
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 7.6e-17 91.3 169 32.0
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 7.6e-17 91.3 169 32.0
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.6e-17 91.3 169 34.3
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.3e-16 90.5 164 32.3
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-16 90.5 179 34.1
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.7e-16 90.1 179 33.5
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-16 90.1 176 34.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.7e-16 90.1 183 33.3
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.9e-16 89.4 176 33.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 3.8e-16 89.0 165 30.9
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 4.9e-16 88.6 183 33.3
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 6.4e-16 88.2 169 32.5
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 6.4e-16 88.2 179 33.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 8.4e-16 87.8 172 32.0
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 1.4e-15 87.0 174 32.8
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.9e-15 86.7 84 48.8
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.4e-15 86.3 84 50.0
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 5.5e-15 85.1 125 36.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.5e-15 85.1 168 31.0
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 5.5e-15 85.1 180 35.0
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 7.1e-15 84.7 179 33.0
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-14 82.8 179 30.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 3.5e-14 82.4 168 33.9
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.5e-14 82.4 140 36.4
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.3e-13 80.5 163 30.7
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-13 80.5 178 30.3
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.8e-13 80.1 171 33.9
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.3e-13 79.7 179 32.4
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.0e-13 79.3 180 31.1
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.0e-13 79.3 133 37.6
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 3.9e-13 79.0 111 37.8
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.9e-13 79.0 182 31.9
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 5.1e-13 78.6 182 29.7
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 6.7e-13 78.2 179 30.7
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 8.7e-13 77.8 183 33.9
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 8.7e-13 77.8 179 33.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 8.7e-13 77.8 149 33.6
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.7e-13 77.8 123 39.0
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-12 77.4 179 30.7
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.1e-12 77.4 177 29.9
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.9e-12 76.6 178 30.3
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-12 76.6 176 30.7
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 3.3e-12 75.9 178 30.3
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.3e-12 75.9 133 36.8
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 4.3e-12 75.5 177 32.8
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.6e-12 75.1 121 38.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-11 73.9 178 28.1
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.6e-11 73.6 178 29.2
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 2.1e-11 73.2 184 32.6
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 2.1e-11 73.2 128 38.3
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 2.1e-11 73.2 133 37.6
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.8e-11 72.8 133 36.8
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 3.7e-11 72.4 60 56.7
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.7e-11 72.4 179 30.2
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 6.2e-11 71.6 126 36.5
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 8.1e-11 71.2 178 30.9
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 8.1e-11 71.2 168 33.9
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.5e-09 67.0 98 37.8
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.4e-09 65.9 134 33.6
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.8e-09 65.1 124 33.9
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 7.6e-09 64.7 89 37.1
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 1.7e-08 63.5 128 35.2
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.2e-08 63.2 93 40.9
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 2.5e-07 59.7 89 37.1
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 7.9e-06 54.7 172 26.2


User provided reference genes

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