Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 8.5e-105 383.6 190 100.0
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 3.4e-77 292.0 164 87.2
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 4.6e-74 281.6 191 73.8
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 2.4e-67 259.2 156 82.1
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 8.7e-41 171.0 195 44.6
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-39 167.2 195 45.6
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-39 166.4 199 47.7
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.8e-39 166.0 191 47.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 3.7e-39 165.6 201 46.3
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.7e-39 165.6 195 44.6
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-38 164.1 206 47.1
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.4e-38 163.7 197 46.7
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.6e-37 159.5 209 43.1
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 2.6e-37 159.5 195 43.1
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 4.5e-37 158.7 195 45.1
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.5e-37 158.7 191 47.1
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.0e-36 157.5 201 43.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.9e-36 156.0 191 47.1
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.9e-36 156.0 191 47.1
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.8e-36 155.6 190 43.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.5e-36 154.8 209 41.6
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.5e-36 154.8 209 41.6
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 6.5e-36 154.8 191 47.1
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 6.5e-36 154.8 191 47.1
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.4e-35 153.7 191 46.6
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.9e-35 153.3 201 43.3
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 1.9e-35 153.3 203 42.4
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.9e-35 153.3 199 42.7
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 2.5e-35 152.9 200 43.0
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.2e-35 152.5 208 42.8
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 6.0e-34 148.3 200 40.0
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 7.9e-34 147.9 193 45.6
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.8e-33 146.7 208 41.8
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-33 146.4 193 44.6
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 2.3e-33 146.4 193 44.6
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 2.3e-33 146.4 200 43.0
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.9e-33 145.6 181 44.8
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 8.7e-33 144.4 193 44.6
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-32 144.1 208 40.4
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.1e-32 144.1 206 41.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.1e-32 144.1 206 42.2
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.5e-32 143.7 191 44.0
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.9e-32 143.3 194 42.8
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.3e-32 142.5 195 43.1
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 5.7e-32 141.7 205 40.5
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 5.7e-32 141.7 195 44.6
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.7e-32 141.7 193 42.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 5.7e-32 141.7 194 42.8
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 9.6e-32 141.0 193 40.9
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.6e-31 140.2 198 41.4
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.8e-31 139.4 202 42.6
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 3.7e-31 139.0 143 50.3
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.7e-31 139.0 196 40.8
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.8e-31 138.7 193 43.5
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.1e-30 137.5 196 41.8
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.8e-30 136.7 190 39.5
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.3e-30 135.2 195 42.1
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.9e-30 134.8 184 41.3
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 9.0e-30 134.4 163 46.6
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.2e-29 134.0 193 41.5
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.5e-29 133.7 203 41.4
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.5e-29 133.7 203 41.4
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.5e-29 133.7 174 44.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 2.0e-29 133.3 193 40.4
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.9e-29 131.7 193 42.0
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.0e-28 131.0 196 39.8
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.3e-28 130.6 193 40.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.2e-28 129.8 189 39.7
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.2e-28 129.8 194 42.3
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.8e-28 129.0 193 40.9
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.8e-28 129.0 200 41.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.0e-28 128.6 196 41.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.0e-28 128.6 196 41.8
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 6.5e-28 128.3 183 39.9
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.5e-28 128.3 186 39.8
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 6.5e-28 128.3 178 41.6
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 6.5e-28 128.3 180 40.6
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-27 127.5 193 40.4
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.4e-27 127.1 200 36.5
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.9e-27 126.7 174 44.8
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.9e-27 126.7 216 36.6
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.9e-27 126.7 194 43.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 2.5e-27 126.3 215 38.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 4.2e-27 125.6 199 37.7
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.2e-26 124.0 197 40.1
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 2.1e-26 123.2 197 37.6
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.5e-26 122.5 213 36.2
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 6.1e-26 121.7 204 36.3
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.0e-25 120.9 207 37.2
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.8e-25 120.2 207 37.2
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.8e-25 120.2 203 38.4
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.3e-25 119.8 188 36.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.0e-25 119.4 225 36.4
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.9e-24 116.7 191 36.6
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.3e-24 115.9 190 37.9
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 7.4e-24 114.8 198 35.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-23 113.6 190 36.8
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.6e-23 113.6 190 36.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.2e-23 113.2 211 39.3
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.2e-23 113.2 193 37.8
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.7e-23 112.5 192 35.4
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 4.8e-23 112.1 182 37.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 6.3e-23 111.7 215 34.4
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 6.3e-23 111.7 190 36.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-22 110.9 193 37.3
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-22 110.2 107 51.4
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 2.4e-22 109.8 229 34.5
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 2.4e-22 109.8 229 34.5
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.4e-22 109.8 203 33.0
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.1e-22 109.0 194 37.1
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 9.0e-22 107.8 192 35.4
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.2e-21 107.5 185 35.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.2e-21 107.5 210 33.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.6e-21 106.3 184 34.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.6e-21 106.3 194 36.6
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 3.4e-21 105.9 174 37.4
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.5e-21 105.5 198 34.8
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 5.9e-21 105.1 182 36.3
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 5.9e-21 105.1 191 34.0
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 5.9e-21 105.1 191 34.0
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 5.9e-21 105.1 191 34.0
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.7e-21 104.8 190 36.8
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.0e-20 104.4 198 34.8
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-20 104.0 198 34.3
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.7e-20 103.6 180 39.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 2.9e-20 102.8 201 34.8
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 3.8e-20 102.4 197 35.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 5.0e-20 102.1 186 34.4
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.0e-20 102.1 190 34.7
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 5.0e-20 102.1 200 35.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 6.5e-20 101.7 204 34.8
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.5e-20 101.3 198 33.8
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 8.5e-20 101.3 170 38.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.4e-19 100.5 199 33.7
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.9e-19 100.1 203 34.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-19 100.1 197 34.5
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 5.5e-19 98.6 147 39.5
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 5.5e-19 98.6 197 34.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 5.5e-19 98.6 198 34.8
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 5.5e-19 98.6 202 33.7
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 9.4e-19 97.8 196 34.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 9.4e-19 97.8 211 34.1
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.2e-18 97.4 184 34.2
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.6e-18 97.1 205 33.2
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-18 97.1 197 35.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-18 96.3 125 40.8
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 4.6e-18 95.5 198 33.3
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 7.9e-18 94.7 161 36.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 2.3e-17 93.2 199 34.2
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.9e-17 92.4 198 31.8
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.9e-17 92.4 195 32.8
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 6.7e-17 91.7 198 32.8
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.7e-17 91.7 142 41.5
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 8.8e-17 91.3 212 32.5
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.5e-16 90.5 139 37.4
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-16 90.5 195 31.8
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-16 90.5 197 31.5
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 2.0e-16 90.1 193 32.6
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-16 90.1 198 34.3
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 2.5e-16 89.7 196 36.2
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.3e-16 89.4 210 32.4
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 5.7e-16 88.6 203 34.0
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 5.7e-16 88.6 199 33.2
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 9.7e-16 87.8 200 33.5
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 3.7e-15 85.9 86 51.2
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 8.2e-15 84.7 209 33.0
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.1e-14 84.3 133 39.1
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.1e-14 84.3 132 39.4
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.4e-14 84.0 156 37.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-14 83.6 140 35.7
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-14 83.2 133 38.3
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 9.1e-14 81.3 198 33.3
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.1e-14 81.3 133 38.3
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.2e-13 80.9 167 32.9
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 2.6e-13 79.7 162 34.0
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.2e-12 76.6 132 37.1
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 6.5e-12 75.1 132 36.4
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 8.5e-12 74.7 147 35.4
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 8.5e-12 74.7 116 38.8
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.5e-11 73.2 123 35.8
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.2e-11 72.4 193 30.6
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-10 69.7 190 28.4
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 3.6e-10 69.3 107 33.6
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 6.1e-10 68.6 135 34.1
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.7e-09 65.1 93 39.8
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.6e-08 63.2 98 37.8
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 9.7e-08 61.2 194 26.8
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 3.1e-06 56.2 89 37.1


User provided reference genes

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