Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003485 Daucus carota HOM05D021311 ORTHO05D012969 1.2e-58 229.6 111 100.0
Hma1.2p1_0017F.1_g011100 Hydrangea macrophylla HOM05D012974 ORTHO05D012969 1.3e-15 86.7 72 59.7
TAR633G0605 Trochodendron aralioides HOM05D012974 ORTHO05D012969 1.1e-14 83.6 82 56.1
TAR633G0276 Trochodendron aralioides HOM05D012974 ORTHO05D012969 4.5e-13 78.2 61 63.9
TAR613G0002 Trochodendron aralioides HOM05D000057 ORTHO05D010499 2.1e-10 69.3 70 52.9
TAR613G0003 Trochodendron aralioides HOM05D000057 ORTHO05D010499 2.1e-10 69.3 70 52.9
TAR636G3259 Trochodendron aralioides HOM05D000057 ORTHO05D010499 6.1e-10 67.8 70 51.4
ATR0820G248 Amborella trichopoda HOM05D000204 ORTHO05D005102 1.1e-08 63.5 94 35.1
TAR613G0001 Trochodendron aralioides HOM05D009046 ORTHO05D010499 1.1e-08 63.5 70 48.6
Rhsim01G0204300 Rhododendron simsii HOM05D042460 ORTHO05D050657 3.3e-08 62.0 63 44.4
arahy.Tifrunner.gnm1.ann1.R6N347 Arachis hypogaea HOM05D000057 ORTHO05D000021 1.3e-07 60.1 94 35.1
Glyma.04G025300 Glycine max HOM05D000057 ORTHO05D000021 1.3e-07 60.1 77 36.4
Glyma.06G025300 Glycine max HOM05D000057 ORTHO05D000021 1.3e-07 60.1 77 36.4
Lalb_Chr01g0002021 Lupinus albus HOM05D000057 ORTHO05D000021 2.2e-07 59.3 76 36.8
Haze_21162 Corylus avellana HOM05D021311 ORTHO05D012969 2.8e-07 58.9 63 50.8
Nn2g10332 Nelumbo nucifera HOM05D009046 ORTHO05D010499 2.8e-07 58.9 77 39.0
Cfa017051 Carpinus fangiana HOM05D021311 ORTHO05D012969 3.7e-07 58.5 67 50.7
Phvul.009G015900 Phaseolus vulgaris HOM05D000057 ORTHO05D000021 3.7e-07 58.5 78 37.2
CDE04G1478 Ceratophyllum demersum HOM05D000204 ORTHO05D000021 4.8e-07 58.2 70 41.4
CDE06G1951 Ceratophyllum demersum HOM05D000204 ORTHO05D000021 4.8e-07 58.2 71 42.3
Medtr3g117630 Medicago truncatula HOM05D000057 ORTHO05D000021 4.8e-07 58.2 81 34.6
Medtr4g072310 Medicago truncatula HOM05D000057 ORTHO05D000021 6.3e-07 57.8 77 35.1
Potri.005G237200 Populus trichocarpa HOM05D000057 ORTHO05D000021 6.3e-07 57.8 63 41.3
Sabra05G0183400 Salix brachista HOM05D000057 ORTHO05D000021 6.3e-07 57.8 63 41.3
Solyc10g054720.1 Solanum lycopersicum HOM05D000057 ORTHO05D000021 6.3e-07 57.8 82 36.6
Sopen10g024630 Solanum pennellii HOM05D000057 ORTHO05D000021 8.2e-07 57.4 82 36.6
Aa31LG8G13860 Aethionema arabicum HOM05D000057 ORTHO05D000021 1.1e-06 57.0 80 33.8
arahy.Tifrunner.gnm1.ann1.32LLN4 Arachis hypogaea HOM05D000057 ORTHO05D000021 1.1e-06 57.0 84 33.3
Mapoly0060s0079 Marchantia polymorpha HOM05D000204 ORTHO05D000021 1.1e-06 57.0 63 39.7
Pp3c13_3260 Physcomitrium patens HOM05D000057 ORTHO05D000021 1.1e-06 57.0 75 38.7
Psat7g181640 Pisum sativum HOM05D000057 ORTHO05D000021 1.1e-06 57.0 65 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2307 Anthoceros agrestis HOM05D000204 ORTHO05D000021 1.4e-06 56.6 61 41.0
A07p28760 Brassica napus HOM05D000057 ORTHO05D000021 1.4e-06 56.6 73 37.0
BraA07t30516Z Brassica rapa HOM05D000057 ORTHO05D000021 1.4e-06 56.6 73 37.0
PGSC0003DMG400026709 Solanum tuberosum HOM05D000057 ORTHO05D000021 1.4e-06 56.6 82 35.4
AT1G75580 Arabidopsis thaliana HOM05D000057 ORTHO05D000021 1.8e-06 56.2 87 29.9
Gohir.D05G190501 Gossypium hirsutum HOM05D000057 ORTHO05D000021 1.8e-06 56.2 65 38.5
Gorai.009G195800 Gossypium raimondii HOM05D000057 ORTHO05D000021 1.8e-06 56.2 65 38.5
Hma1.2p1_0638F.1_g193710 Hydrangea macrophylla HOM05D000057 ORTHO05D000021 1.8e-06 56.2 73 37.0
Medtr4g072190 Medicago truncatula HOM05D000057 ORTHO05D000021 1.8e-06 56.2 76 34.2
TPR.G7129 Trifolium pratense HOM05D000057 ORTHO05D000021 1.8e-06 56.2 78 33.3
BcaB03g11811 Brassica carinata HOM05D000057 ORTHO05D000021 2.4e-06 55.8 83 33.7
BcaC01g00873 Brassica carinata HOM05D000057 ORTHO05D000021 2.4e-06 55.8 83 34.9
BcaC08g45566 Brassica carinata HOM05D000057 ORTHO05D000021 2.4e-06 55.8 73 37.0
C06p32510 Brassica napus HOM05D000057 ORTHO05D000021 2.4e-06 55.8 73 37.0
BolC6t38373H Brassica oleracea HOM05D000057 ORTHO05D000021 2.4e-06 55.8 73 37.0
DCAR_022786 Daucus carota HOM05D000057 ORTHO05D000021 2.4e-06 55.8 74 37.8
Glyma.12G035700 Glycine max HOM05D000057 ORTHO05D000021 2.4e-06 55.8 68 38.2
Lsat_1_v5_gn_2_8040 Lactuca sativa HOM05D000057 ORTHO05D000021 2.4e-06 55.8 77 36.4
Lalb_Chr14g0369811 Lupinus albus HOM05D000057 ORTHO05D000021 2.4e-06 55.8 74 39.2
Potri.002G024300 Populus trichocarpa HOM05D000057 ORTHO05D000021 2.4e-06 55.8 63 39.7
Thecc.04G174900 Theobroma cacao HOM05D009046 ORTHO05D010499 2.4e-06 55.8 81 38.3
C07p61530 Brassica napus HOM05D000057 ORTHO05D000021 3.1e-06 55.5 76 32.9
BolC7t46577H Brassica oleracea HOM05D000057 ORTHO05D000021 3.1e-06 55.5 76 32.9
AUR62010363 Chenopodium quinoa HOM05D000057 ORTHO05D000021 3.1e-06 55.5 65 36.9
AUR62016857 Chenopodium quinoa HOM05D000057 ORTHO05D000021 3.1e-06 55.5 65 36.9
Ca_20474_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 3.1e-06 55.5 63 39.7
Ca_20941_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 3.1e-06 55.5 78 33.3
Ca_30299_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 3.1e-06 55.5 78 33.3
Lj9P384T33 Lonicera japonica HOM05D000057 ORTHO05D000021 3.1e-06 55.5 87 34.5
Lj9P385T33 Lonicera japonica HOM05D000057 ORTHO05D000021 3.1e-06 55.5 87 34.5
Lj3g0011152 Lotus japonicus HOM05D000057 ORTHO05D000021 3.1e-06 55.5 77 33.8
Lalb_Chr23g0266211 Lupinus albus HOM05D000057 ORTHO05D000021 3.1e-06 55.5 82 35.4
RcHm_v2.0_Chr6g0268551 Rosa chinensis HOM05D000057 ORTHO05D000021 3.1e-06 55.5 72 36.1
SalBow8G1393 Salvia bowleyana HOM05D000057 ORTHO05D000021 3.1e-06 55.5 61 41.0
AT2G21220 Arabidopsis thaliana HOM05D000057 ORTHO05D000021 4.1e-06 55.1 65 35.4
CARHR243060 Cardamine hirsuta HOM05D000057 ORTHO05D000021 4.1e-06 55.1 83 31.3
Cpa.g.sc340.3 Carica papaya HOM05D021311 ORTHO05D012969 4.1e-06 55.1 57 54.4
FvH4_2g10770 Fragaria vesca HOM05D000057 ORTHO05D000021 4.1e-06 55.1 72 36.1
FAN15G3474 Fragaria x ananassa HOM05D000057 ORTHO05D000021 4.1e-06 55.1 72 36.1
FAN20G3153 Fragaria x ananassa HOM05D000057 ORTHO05D000021 4.1e-06 55.1 72 36.1
Glyma.09G219900 Glycine max HOM05D000057 ORTHO05D000021 4.1e-06 55.1 72 37.5
Lalb_Chr22g0354391 Lupinus albus HOM05D000057 ORTHO05D000021 4.1e-06 55.1 69 39.1
Medtr3g110045 Medicago truncatula HOM05D000057 ORTHO05D000021 4.1e-06 55.1 96 34.4
Peaxi162Scf00128g01631 Petunia axillaris HOM05D000204 ORTHO05D002693 4.1e-06 55.1 73 37.0
Prupe.8G082100 Prunus persica HOM05D000057 ORTHO05D000021 4.1e-06 55.1 65 36.9
Sabra06G0162500 Salix brachista HOM05D000204 ORTHO05D005102 4.1e-06 55.1 95 33.7
THA.LOC104804258 Tarenaya hassleriana HOM05D000057 ORTHO05D000021 4.1e-06 55.1 66 34.8
arahy.Tifrunner.gnm1.ann1.2S3BSH Arachis hypogaea HOM05D000057 ORTHO05D000021 5.3e-06 54.7 77 35.1
A03p63130 Brassica napus HOM05D000057 ORTHO05D000021 5.3e-06 54.7 96 33.3
A08p16600 Brassica napus HOM05D000057 ORTHO05D000021 5.3e-06 54.7 83 33.7
C03p85490 Brassica napus HOM05D000057 ORTHO05D000021 5.3e-06 54.7 83 33.7
BolC3t20836H Brassica oleracea HOM05D000057 ORTHO05D000021 5.3e-06 54.7 83 33.7
BraA03t15389Z Brassica rapa HOM05D000057 ORTHO05D000021 5.3e-06 54.7 96 33.3
BraA08t33625Z Brassica rapa HOM05D000057 ORTHO05D000021 5.3e-06 54.7 83 33.7
Ca_20487_v3 Cicer arietinum L. HOM05D000057 ORTHO05D000021 5.3e-06 54.7 63 41.3
Gohir.A05G187600 Gossypium hirsutum HOM05D000057 ORTHO05D000021 5.3e-06 54.7 59 42.4
Lj1g0027825 Lotus japonicus HOM05D000057 ORTHO05D000021 5.3e-06 54.7 76 35.5
Sopen01g052740 Solanum pennellii HOM05D000057 ORTHO05D000021 5.3e-06 54.7 65 40.0
THA.LOC104803884 Tarenaya hassleriana HOM05D000204 ORTHO05D004008 5.3e-06 54.7 62 40.3
THA.LOC104807491 Tarenaya hassleriana HOM05D000057 ORTHO05D000021 5.3e-06 54.7 63 36.5
Aa31LG4G5810 Aethionema arabicum HOM05D000057 ORTHO05D000021 6.9e-06 54.3 76 35.5
Aqoxy6G02308 Aquilegia oxysepala HOM05D000057 ORTHO05D000021 6.9e-06 54.3 87 31.0
AL7G16440 Arabidopsis lyrata HOM05D000057 ORTHO05D000021 6.9e-06 54.3 78 33.3
AT4G34760 Arabidopsis thaliana HOM05D000057 ORTHO05D000021 6.9e-06 54.3 78 33.3
CAN.G1329.9 Capsicum annuum HOM05D000057 ORTHO05D000021 6.9e-06 54.3 65 38.5
CARHR068970 Cardamine hirsuta HOM05D000057 ORTHO05D000021 6.9e-06 54.3 88 30.7
CiPaw.06G127000 Carya illinoinensis HOM05D000057 ORTHO05D000021 6.9e-06 54.3 73 34.2
FAN24G2264 Fragaria x ananassa HOM05D000057 ORTHO05D000021 6.9e-06 54.3 59 40.7
MD10G1061300 Malus domestica HOM05D000057 ORTHO05D000021 6.9e-06 54.3 67 35.8
PGR042G3810 Punica granatum HOM05D000057 ORTHO05D000021 6.9e-06 54.3 83 36.1
TPR.G23754 Trifolium pratense HOM05D000057 ORTHO05D000021 6.9e-06 54.3 65 36.9
TPR.G385 Trifolium pratense HOM05D000057 ORTHO05D000021 6.9e-06 54.3 65 36.9
TWI36G1234 Tripterygium wilfordii HOM05D000057 ORTHO05D000021 6.9e-06 54.3 65 36.9
Aqoxy2G01398 Aquilegia oxysepala HOM05D012974 ORTHO05D012969 9.1e-06 53.9 72 41.7
AL2G35560 Arabidopsis lyrata HOM05D000057 ORTHO05D000021 9.1e-06 53.9 87 28.7
arahy.Tifrunner.gnm1.ann1.KEU1LS Arachis hypogaea HOM05D000057 ORTHO05D000021 9.1e-06 53.9 77 35.1
BcaB05g24922 Brassica carinata HOM05D000057 ORTHO05D000021 9.1e-06 53.9 87 29.9
BcaNung04300 Brassica carinata HOM05D000057 ORTHO05D000021 9.1e-06 53.9 94 31.9
Carub.0003s3215 Capsella rubella HOM05D000057 ORTHO05D000021 9.1e-06 53.9 63 38.1
Haze_21161 Corylus avellana HOM05D021311 ORTHO05D012969 9.1e-06 53.9 70 45.7
Glyma.06G281100 Glycine max HOM05D000057 ORTHO05D000021 9.1e-06 53.9 82 34.1
Rhsim01G0204500 Rhododendron simsii HOM05D042460 ORTHO05D050657 9.1e-06 53.9 78 34.6
Sp7g33890 Schrenkiella parvula HOM05D000057 ORTHO05D000021 9.1e-06 53.9 63 34.9
SGA_v2.0_scaffold32G13254 Striga asiatica HOM05D000057 ORTHO05D000021 9.1e-06 53.9 63 38.1
TWI75G0956 Tripterygium wilfordii HOM05D000057 ORTHO05D000021 9.1e-06 53.9 74 35.1
HPP92_007253 Vanilla planifolia HOM05D000057 ORTHO05D000021 9.1e-06 53.9 73 38.4


User provided reference genes

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