Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 6.3e-191 670.6 340 100.0
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 8.7e-108 394.4 350 62.0
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 9.9e-104 380.9 333 60.7
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.2e-102 375.9 346 57.8
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.1e-102 374.8 342 58.5
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 7.1e-102 374.8 336 59.2
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.2e-101 374.0 343 58.3
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 2.3e-100 369.8 352 57.1
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.1e-99 367.5 352 56.2
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.9e-99 366.7 339 59.0
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 3.3e-99 365.9 333 58.0
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 7.3e-99 364.8 336 57.4
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 2.8e-98 362.8 346 57.5
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 3.6e-98 362.5 341 56.6
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 8.1e-98 361.3 345 58.6
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.2e-96 357.5 333 56.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.2e-96 357.5 332 57.8
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 5.8e-96 355.1 376 53.5
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 7.6e-96 354.8 342 56.4
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 7.6e-96 354.8 336 57.7
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.7e-95 353.6 329 58.4
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.7e-95 353.6 329 58.4
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 4.9e-95 352.1 335 56.1
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 6.4e-95 351.7 364 54.7
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.9e-94 350.1 373 53.6
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.9e-94 350.1 373 53.6
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 4.2e-94 349.0 334 54.5
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 4.2e-94 349.0 334 57.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 9.3e-94 347.8 330 55.2
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.2e-93 347.4 340 55.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 1.6e-93 347.1 343 54.5
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 2.1e-93 346.7 337 55.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 2.1e-93 346.7 336 56.2
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.7e-93 346.3 336 56.2
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 4.6e-93 345.5 328 54.3
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 6.0e-93 345.1 341 54.0
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.3e-92 344.0 344 53.5
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.8e-92 343.6 349 53.6
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.3e-92 343.2 328 53.7
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 3.0e-92 342.8 327 54.7
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 3.0e-92 342.8 334 54.2
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 3.9e-92 342.4 347 54.2
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.5e-91 340.5 335 55.2
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.5e-91 340.5 328 55.2
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.5e-91 339.7 330 54.8
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 3.3e-91 339.3 332 55.1
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 5.6e-91 338.6 339 55.5
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 5.6e-91 338.6 334 55.1
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 7.4e-91 338.2 330 57.3
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 9.6e-91 337.8 334 53.3
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.6e-90 337.0 344 53.8
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 2.1e-90 336.7 342 52.0
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.1e-90 336.7 345 53.3
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.1e-90 336.7 341 54.0
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.8e-90 336.3 345 53.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 2.8e-90 336.3 336 54.5
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 6.2e-90 335.1 352 52.6
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 6.2e-90 335.1 341 54.5
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 2.4e-89 333.2 336 54.2
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 2.4e-89 333.2 335 54.0
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.0e-89 332.4 329 55.6
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 5.3e-89 332.0 340 52.4
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 9.0e-89 331.3 327 52.6
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.2e-88 330.9 325 54.5
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.5e-88 330.5 340 54.1
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.5e-88 330.5 329 55.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.6e-88 329.7 341 52.8
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 3.4e-88 329.3 330 55.5
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 5.8e-88 328.6 347 53.0
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 5.8e-88 328.6 336 53.0
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 5.8e-88 328.6 341 52.5
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.6e-88 328.2 334 52.7
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.7e-87 327.0 331 54.4
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 2.9e-87 326.2 326 54.0
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 3.8e-87 325.9 328 54.0
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 6.5e-87 325.1 325 54.8
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-86 323.9 346 50.6
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-86 323.9 346 50.6
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-86 323.9 346 50.6
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-86 323.9 346 50.6
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 9.3e-86 321.2 337 51.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 9.3e-86 321.2 347 51.9
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 9.3e-86 321.2 346 50.9
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 9.3e-86 321.2 350 50.6
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.7e-85 319.7 310 55.5
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 6.0e-85 318.5 337 52.2
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 6.0e-85 318.5 335 51.9
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 4.3e-83 312.4 336 50.3
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 2.1e-82 310.1 263 58.6
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 4.1e-81 305.8 326 52.5
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 9.0e-81 304.7 332 50.9
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 6.5e-79 298.5 348 49.7
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.1e-77 293.5 326 49.7
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 6.1e-77 292.0 328 47.9
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 6.1e-77 292.0 282 52.8
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.6e-74 283.9 326 51.2
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 5.9e-72 275.4 332 46.4
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 5.9e-72 275.4 348 44.8
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.5e-71 271.6 181 72.4
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 3.6e-61 239.6 337 42.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.4e-60 237.7 338 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 3.3e-59 233.0 331 42.3
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 4.8e-58 229.2 168 64.3
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-57 228.0 166 66.9
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 3.2e-54 216.5 302 43.4
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 3.6e-53 213.0 343 38.5
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 5.2e-52 209.1 193 55.4
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.3e-50 202.2 133 71.4
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 2.0e-48 197.2 330 40.0
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.0e-47 194.9 237 47.3
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.3e-47 194.5 331 37.8
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.2e-47 193.7 349 36.1
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.8e-44 184.1 320 41.2
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 3.4e-43 179.9 131 63.4
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 1.5e-38 164.5 362 32.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 9.4e-38 161.8 321 34.6
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.8e-36 157.5 322 38.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.3e-36 157.1 208 45.7
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 6.6e-31 139.0 300 30.7
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.6e-29 134.4 248 37.9
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.3e-28 130.6 86 69.8
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 7.5e-27 125.6 130 52.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.1e-25 121.7 338 28.7
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.0e-23 115.2 130 53.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 7.3e-22 109.0 144 45.8
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.3e-22 109.0 77 67.5
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 8.0e-21 105.5 70 65.7
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 2.7e-16 90.5 70 61.4
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 3.9e-15 86.7 133 38.3
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 2.8e-13 80.5 132 31.8
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 1.5e-11 74.7 160 38.8
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 6.0e-08 62.8 168 29.2
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 3.0e-07 60.5 110 27.3
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.5e-06 58.2 58 53.4


User provided reference genes

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