Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 3.2e-147 525.0 254 100.0
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 3.3e-136 488.4 289 84.8
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 7.7e-69 264.6 289 49.8
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 1.0e-68 264.2 292 49.3
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 1.2e-66 257.3 288 47.9
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.6e-66 256.9 298 47.7
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 4.7e-66 255.4 295 49.2
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 5.2e-65 251.9 288 48.6
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 5.2e-65 251.9 289 47.1
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 6.8e-65 251.5 295 49.2
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 6.8e-65 251.5 292 49.3
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 8.8e-65 251.1 292 48.3
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 8.8e-65 251.1 291 47.1
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 2.0e-64 250.0 290 46.6
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 2.0e-64 250.0 291 46.7
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.4e-64 248.8 282 47.9
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 9.8e-64 247.7 290 49.0
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 9.8e-64 247.7 289 46.4
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 1.3e-63 247.3 286 48.3
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.7e-63 246.9 307 45.3
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 1.7e-63 246.9 285 48.1
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 2.8e-63 246.1 288 49.3
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 4.9e-63 245.4 290 47.2
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 4.9e-63 245.4 284 47.5
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 4.9e-63 245.4 288 47.9
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 4.9e-63 245.4 293 46.4
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 6.3e-63 245.0 285 46.7
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 2.4e-62 243.0 295 45.8
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 3.1e-62 242.7 281 47.7
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 3.1e-62 242.7 289 47.1
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 3.1e-62 242.7 289 45.3
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 4.1e-62 242.3 291 45.0
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 5.4e-62 241.9 288 45.8
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 5.4e-62 241.9 284 46.8
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 9.2e-62 241.1 295 46.8
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 1.2e-61 240.7 293 48.8
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.2e-61 240.7 288 46.2
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 2.0e-61 240.0 290 45.5
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 2.0e-61 240.0 279 48.0
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 2.7e-61 239.6 285 46.7
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.7e-60 236.9 289 45.3
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 2.9e-60 236.1 290 45.9
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.9e-60 236.1 291 47.1
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 2.9e-60 236.1 292 45.2
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 5.0e-60 235.3 289 44.6
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 5.0e-60 235.3 290 45.9
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 8.6e-60 234.6 285 46.0
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 8.6e-60 234.6 291 47.1
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 8.6e-60 234.6 287 46.0
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.1e-59 234.2 292 46.6
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 1.1e-59 234.2 293 44.0
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 1.5e-59 233.8 292 43.5
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 2.5e-59 233.0 293 46.8
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 3.3e-59 232.6 288 46.2
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 4.3e-59 232.3 285 45.3
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 4.3e-59 232.3 286 46.2
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 4.3e-59 232.3 295 44.1
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 5.6e-59 231.9 287 44.3
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 5.6e-59 231.9 289 42.6
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 5.6e-59 231.9 283 45.6
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 7.3e-59 231.5 256 50.4
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 9.5e-59 231.1 288 44.1
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 9.5e-59 231.1 288 44.8
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.2e-58 230.7 285 45.6
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 1.6e-58 230.3 287 43.6
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.6e-58 230.3 285 45.6
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 2.1e-58 229.9 285 43.9
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 2.1e-58 229.9 288 44.4
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 2.8e-58 229.6 285 45.6
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 3.6e-58 229.2 292 44.2
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 4.7e-58 228.8 293 45.7
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 8.0e-58 228.0 290 43.4
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 1.4e-57 227.3 291 45.4
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 1.8e-57 226.9 286 44.8
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 1.8e-57 226.9 285 43.9
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 2.3e-57 226.5 303 42.9
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 1.2e-56 224.2 288 45.5
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 4.4e-56 222.2 285 44.2
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 7.5e-56 221.5 304 45.1
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 7.5e-56 221.5 286 44.8
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 2.2e-55 219.9 302 42.1
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 8.3e-55 218.0 287 40.8
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 2.4e-54 216.5 297 39.4
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 2.4e-54 216.5 250 50.8
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 7.0e-54 214.9 264 44.7
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 9.2e-54 214.5 298 39.6
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.7e-53 213.0 251 47.8
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.0e-52 211.1 289 40.5
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 5.0e-52 208.8 290 42.4
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 3.6e-50 202.6 291 40.5
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 3.6e-50 202.6 298 39.9
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 6.2e-50 201.8 282 41.8
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.2e-48 197.6 286 39.9
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.0e-48 196.8 305 41.0
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 4.4e-48 195.7 280 41.8
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 2.9e-47 193.0 278 40.6
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 1.9e-43 180.3 148 56.1
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 3.3e-43 179.5 147 55.8
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 1.6e-42 177.2 213 44.6
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 4.7e-42 175.6 285 38.9
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 5.2e-41 172.2 209 45.5
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 9.8e-40 167.9 143 55.9
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 6.4e-39 165.2 151 53.6
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 3.2e-38 162.9 144 54.9
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 5.4e-38 162.2 147 56.5
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 3.0e-36 156.4 281 35.9
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 8.6e-36 154.8 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 2.1e-34 150.2 159 47.2
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 1.4e-33 147.5 269 34.6
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 4.4e-32 142.5 249 39.4
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.2e-29 134.4 190 41.6
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 1.1e-27 127.9 205 40.0
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 1.2e-24 117.9 122 51.6
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 3.4e-24 116.3 151 41.1
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 7.6e-24 115.2 213 37.6
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 8.4e-23 111.7 79 65.8
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 1.6e-21 107.5 185 37.3
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.9e-14 84.0 77 58.4
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 3.2e-14 83.2 97 47.4
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 7.1e-14 82.0 202 30.7
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 1.0e-12 78.2 255 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 4.3e-11 72.8 101 45.5
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 3.6e-10 69.7 151 30.5
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 6.2e-10 68.9 84 44.0
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.3e-09 65.9 49 57.1
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.5e-08 64.3 48 58.3
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.5e-08 64.3 48 58.3
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.5e-08 64.3 48 58.3
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 2.6e-08 63.5 50 52.0
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.4e-08 63.2 57 47.4
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.4e-08 63.2 49 55.1
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.3e-07 61.2 207 30.4
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.8e-07 59.7 48 54.2
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.4e-07 58.9 72 44.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.1e-06 55.5 42 54.8


User provided reference genes

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