Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.1e-273 946.0 492 100.0
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 5.8e-230 800.8 501 82.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 9.0e-223 776.9 515 77.7
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.5e-222 776.2 520 78.8
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 3.8e-221 771.5 506 78.9
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 3.0e-218 761.9 498 78.7
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.5e-217 759.6 515 75.0
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 4.8e-216 754.6 516 76.0
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.8e-216 754.6 478 80.8
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-215 753.1 501 77.8
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-215 752.7 503 77.1
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 6.9e-215 750.7 516 75.6
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.2e-214 750.0 486 78.4
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.2e-214 750.0 475 79.6
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.2e-214 750.0 510 76.7
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 2.0e-214 749.2 500 77.2
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.5e-214 748.0 513 74.9
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 7.6e-214 747.3 495 76.6
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 9.9e-214 746.9 504 76.8
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.9e-212 742.7 523 74.4
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.2e-212 741.9 473 79.9
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.1e-212 740.7 501 77.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 2.1e-211 739.2 501 75.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.0e-210 736.9 527 73.2
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 1.3e-210 736.5 523 74.0
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 3.9e-210 734.9 518 73.4
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 5.1e-210 734.6 514 73.7
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 5.1e-210 734.6 500 75.8
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 8.7e-210 733.8 500 75.6
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.1e-209 733.4 503 74.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.5e-209 733.0 518 73.2
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.9e-209 732.6 500 75.6
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.5e-209 732.3 502 76.1
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.5e-209 732.3 522 73.8
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.5e-209 732.3 500 74.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.3e-209 731.9 522 73.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 7.4e-209 730.7 519 72.1
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.4e-209 730.7 508 74.6
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.3e-208 729.9 504 73.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.6e-208 729.6 508 74.4
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.6e-208 729.6 500 74.2
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.1e-208 729.2 518 72.8
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 3.7e-208 728.4 501 75.0
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.1e-207 726.9 505 75.2
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.4e-207 726.5 503 73.6
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 3.1e-207 725.3 521 71.6
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 9.0e-207 723.8 509 72.3
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 9.0e-207 723.8 518 71.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.5e-206 723.0 516 73.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.4e-206 721.8 514 72.8
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 4.5e-206 721.5 514 73.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.8e-206 721.1 516 73.3
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.2e-205 719.2 510 73.9
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.2e-205 719.2 509 73.5
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 2.9e-205 718.8 524 72.3
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.4e-204 716.5 486 75.7
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.5e-204 715.7 502 74.7
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 2.5e-204 715.7 500 73.0
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 3.5e-203 711.8 486 74.9
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 3.5e-203 711.8 593 65.9
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 5.1e-202 708.0 516 71.9
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.1e-202 708.0 534 69.1
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.5e-201 706.4 520 70.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 9.7e-201 703.7 517 71.2
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.7e-200 701.8 520 70.6
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.8e-200 701.4 512 70.9
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 8.2e-200 700.7 507 71.6
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.1e-199 698.7 516 70.2
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.1e-199 698.7 516 69.8
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 3.1e-199 698.7 475 75.8
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 5.3e-199 698.0 535 68.8
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 2.0e-198 696.0 538 68.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.0e-197 693.7 532 68.6
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.3e-197 693.3 535 68.6
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.7e-197 693.0 530 69.2
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 2.9e-197 692.2 538 69.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 9.4e-196 687.2 525 69.1
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.6e-195 685.3 534 68.2
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.0e-194 683.7 519 68.6
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 2.3e-194 682.6 535 68.4
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.1e-194 681.4 607 62.1
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.0e-193 679.5 544 67.3
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 9.7e-193 677.2 551 66.4
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 9.7e-193 677.2 475 73.3
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 2.6e-185 652.5 472 72.0
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.3e-181 640.2 577 61.7
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.5e-177 626.7 560 60.5
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 3.3e-177 625.5 463 71.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 9.7e-177 624.0 424 77.8
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.8e-176 622.5 412 77.4
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 7.7e-174 614.4 542 60.0
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 5.7e-169 598.2 520 61.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.8e-167 593.2 521 60.8
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.0e-162 575.5 521 58.0
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.0e-162 575.5 521 58.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.5e-156 557.0 447 64.0
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.1e-151 540.8 429 68.3
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 8.6e-149 531.2 528 52.8
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.9e-148 530.0 480 57.3
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 8.0e-147 524.6 334 79.3
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 8.0e-147 524.6 364 73.4
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 4.1e-143 512.3 353 73.4
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.6e-142 510.4 367 71.7
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.3e-133 480.7 358 69.6
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 4.7e-123 445.7 320 72.8
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 7.3e-116 421.8 369 63.4
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 4.5e-105 386.0 525 43.4
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.1e-95 354.8 486 42.2
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 7.4e-92 342.0 249 70.3
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.3e-91 341.3 249 70.3
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.7e-83 313.2 490 38.6
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.7e-80 304.3 240 67.5
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 5.7e-76 289.3 325 52.9
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 2.8e-59 233.8 146 80.8
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-52 211.8 505 33.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 3.2e-47 193.7 523 31.4
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 2.1e-46 191.0 113 87.6
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.0e-40 172.2 474 32.1
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.4e-37 161.8 129 65.1
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-37 159.5 278 39.9
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.0e-36 157.9 146 61.0
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 5.9e-33 146.4 462 31.4
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-31 142.1 487 30.2
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-28 130.6 462 31.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.8e-28 129.8 86 70.9
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 4.7e-22 110.2 216 34.7
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 8.1e-22 109.4 294 32.7
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.4e-21 108.6 265 31.3
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-21 108.6 292 31.8
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-21 106.3 273 33.7
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-20 105.1 230 37.8
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-19 101.7 326 31.0
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-19 101.7 206 37.9
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.9e-19 100.9 59 78.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-19 99.8 322 29.8
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 8.3e-19 99.4 332 28.9
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.4e-18 97.8 74 63.5
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-16 91.7 142 41.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 3.0e-16 90.9 159 39.0
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-15 88.6 142 40.8
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 7.3e-15 86.3 200 37.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 5.8e-12 76.6 395 28.1
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.3e-11 75.5 396 27.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 2.9e-11 74.3 352 28.1
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-11 73.2 137 38.0
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 7.1e-10 69.7 296 28.0
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 5.1e-08 63.5 257 29.2
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 1.2e-06 58.9 101 36.6
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 2.1e-06 58.2 48 60.4
FvH4_2g02220 Fragaria vesca HOM05D027463 ORTHO05D035425 2.8e-06 57.8 101 36.6
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 4.7e-06 57.0 32 78.1


User provided reference genes

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