Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.4e-77 291.2 146 100.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 4.3e-56 221.5 146 71.9
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-51 206.5 145 65.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.5e-50 201.8 146 65.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 3.5e-50 201.8 146 65.8
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.5e-48 195.7 146 59.6
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 5.6e-48 194.5 146 60.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 4.8e-47 191.4 144 59.0
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 62.2
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.2e-47 190.7 146 59.6
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-46 189.9 146 61.6
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.4e-46 189.9 141 63.1
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.8e-46 189.5 143 61.5
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.0e-45 186.0 140 60.0
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.6e-45 185.7 143 60.8
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.6e-45 185.7 144 61.1
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 4.5e-45 184.9 146 57.5
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.8e-45 184.5 142 62.7
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 5.8e-45 184.5 143 61.5
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 7.6e-45 184.1 143 62.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.3e-44 183.3 146 56.8
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.2e-44 182.6 142 59.9
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.2e-44 182.6 143 60.1
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.9e-44 182.2 143 58.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 3.8e-44 181.8 146 57.5
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.8e-44 181.8 136 61.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.8e-44 181.8 143 59.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 4.9e-44 181.4 142 60.6
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 8.4e-44 180.6 136 61.0
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.4e-44 180.6 142 60.6
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 8.4e-44 180.6 145 60.0
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 8.4e-44 180.6 140 60.0
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.1e-43 180.3 143 58.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.4e-43 179.9 140 59.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.4e-43 179.9 138 60.1
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.4e-43 179.9 146 55.5
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-43 179.9 138 58.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.9e-43 179.5 141 58.9
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.5e-43 179.1 142 59.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 2.5e-43 179.1 142 59.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 2.5e-43 179.1 147 58.5
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 7.1e-43 177.6 142 58.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 9.3e-43 177.2 138 59.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-42 176.8 139 59.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.2e-42 176.8 140 57.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-42 176.8 138 58.7
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.2e-42 176.8 138 58.7
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.2e-42 176.8 143 57.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-42 176.8 138 58.0
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.6e-42 176.4 140 60.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.6e-42 176.4 141 58.2
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-42 176.4 141 58.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-42 176.4 140 60.7
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.1e-42 176.0 144 59.7
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.7e-42 175.6 139 58.3
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-42 175.6 139 58.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.7e-42 175.6 146 57.5
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.7e-42 175.6 143 58.0
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.5e-42 175.3 145 59.3
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.5e-42 175.3 143 58.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 4.6e-42 174.9 139 58.3
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.6e-42 174.9 145 57.2
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.6e-42 174.9 140 59.3
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.6e-42 174.9 140 60.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.6e-42 174.9 140 60.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 6.0e-42 174.5 139 59.0
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 6.0e-42 174.5 141 58.2
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.9e-42 174.1 139 57.6
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 7.9e-42 174.1 139 58.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 7.9e-42 174.1 143 57.3
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 7.9e-42 174.1 146 54.8
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.0e-41 173.7 143 57.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.0e-41 173.7 141 56.7
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.0e-41 173.7 143 55.9
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.0e-41 173.7 141 57.4
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.3e-41 173.3 145 57.9
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.3e-41 173.3 140 58.6
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.3e-41 173.3 137 59.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.8e-41 172.9 136 58.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 3.0e-41 172.2 136 58.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.0e-41 172.2 135 59.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.0e-41 172.2 144 55.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.0e-41 172.2 139 57.6
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.7e-41 170.6 143 55.9
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 8.7e-41 170.6 161 52.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 8.7e-41 170.6 145 56.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 8.7e-41 170.6 146 54.8
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.9e-40 169.5 146 55.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.9e-40 169.5 121 65.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.5e-40 169.1 147 55.1
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 3.3e-40 168.7 144 56.2
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.3e-40 168.7 134 57.5
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 4.3e-40 168.3 145 60.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 4.3e-40 168.3 145 60.0
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 5.7e-40 167.9 143 57.3
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 7.4e-40 167.5 136 57.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-39 166.4 135 58.5
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.2e-39 166.0 138 56.5
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.7e-39 165.2 155 52.3
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.8e-39 164.9 130 57.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.8e-39 164.9 136 55.1
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 6.3e-39 164.5 134 58.2
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 8.2e-39 164.1 142 54.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 8.2e-39 164.1 143 53.8
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.1e-38 163.7 138 57.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-38 163.3 142 56.3
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.4e-38 162.5 136 56.6
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.3e-38 161.4 147 55.8
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 6.9e-38 161.0 140 55.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 6.9e-38 161.0 137 57.7
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 9.0e-38 160.6 125 58.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.5e-37 159.8 171 48.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.5e-37 159.8 141 56.0
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.5e-37 159.8 117 61.5
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.0e-37 159.5 138 55.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.0e-37 159.5 121 58.7
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 7.7e-37 157.5 121 58.7
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.0e-36 157.1 117 64.1
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.0e-36 157.1 138 53.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.9e-36 155.6 115 61.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 5.0e-36 154.8 117 62.4
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 6.5e-36 154.5 141 51.8
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.4e-35 153.3 143 51.7
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.2e-35 152.1 134 52.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.2e-35 151.8 143 53.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.7e-34 149.1 143 51.7
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.8e-33 146.4 206 40.8
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.0e-33 145.6 143 51.0
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.7e-32 141.4 111 59.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 6.3e-31 137.9 109 54.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.2e-31 137.5 141 48.9
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-30 136.3 116 54.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-30 136.3 99 58.6
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-30 136.3 125 52.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-30 136.3 125 52.0
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 4.2e-27 125.2 99 59.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.2e-27 124.4 99 59.6
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 4.7e-26 121.7 93 58.1
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.7e-26 121.7 131 47.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-24 117.1 142 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.5e-24 116.7 131 42.7
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.8e-22 109.8 131 42.7
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.4e-22 109.4 126 47.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 5.3e-22 108.2 85 58.8
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.5e-21 106.7 126 42.9
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.3e-20 103.6 133 42.1
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.8e-20 102.1 131 43.5
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.4e-19 100.1 130 38.5
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.4e-19 100.1 137 43.1
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-18 97.1 127 43.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.8e-17 93.2 67 61.2
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 3.9e-17 92.0 59 67.8
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.7e-16 88.2 140 36.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-13 80.1 132 34.1
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-13 80.1 112 41.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.2e-12 76.3 53 60.4
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.9e-11 73.2 87 42.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 6.1e-10 68.2 100 40.0
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-09 65.9 58 58.6
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-09 65.9 58 58.6
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-09 65.9 58 58.6
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 6.7e-09 64.7 58 58.6
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.2e-07 59.7 49 51.0
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.4e-06 57.0 112 33.9


User provided reference genes

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