Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-78 296.6 146 100.0
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 8.7e-65 250.4 146 82.9
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-57 226.1 146 71.9
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 6.7e-57 224.2 143 70.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 8.7e-57 223.8 146 69.2
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 7.4e-56 220.7 146 69.2
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.8e-55 218.8 146 67.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 8.1e-55 217.2 146 69.9
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-54 216.5 143 67.8
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 5.3e-54 214.5 143 69.9
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.2e-53 213.4 146 66.4
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-53 213.0 144 66.7
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.0e-53 212.6 146 66.4
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.6e-53 212.2 140 68.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.7e-52 209.5 146 65.1
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.2e-52 209.1 146 65.1
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.9e-52 208.8 144 64.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 3.8e-52 208.4 146 67.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 8.4e-52 207.2 146 65.1
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.9e-51 206.1 144 64.6
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.9e-51 206.1 144 66.0
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 3.2e-51 205.3 146 63.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 5.5e-51 204.5 146 63.7
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 7.1e-51 204.1 146 63.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-50 203.4 146 63.7
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.2e-50 203.4 147 63.3
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-50 203.4 143 62.9
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.6e-50 203.0 142 65.5
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.6e-50 203.0 138 65.2
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.5e-50 201.8 146 63.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.5e-50 201.8 146 63.0
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 3.5e-50 201.8 139 65.5
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.5e-50 201.8 143 65.0
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.5e-50 201.8 140 65.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.5e-50 201.8 140 65.7
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 4.6e-50 201.4 140 64.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.6e-50 201.4 140 64.3
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 6.0e-50 201.1 146 63.0
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 6.0e-50 201.1 144 63.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.0e-49 200.3 141 62.4
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.0e-49 200.3 146 65.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.0e-49 200.3 143 62.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-49 199.9 146 63.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-49 199.9 140 65.0
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.3e-49 199.9 140 65.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.8e-49 199.5 142 64.1
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.8e-49 199.5 144 64.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.3e-49 199.1 146 63.0
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.3e-49 199.1 146 64.4
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.0e-49 198.7 143 63.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.9e-49 198.4 146 62.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 3.9e-49 198.4 146 62.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 3.9e-49 198.4 145 62.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.1e-49 198.0 142 62.7
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.7e-49 197.6 144 64.6
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-48 196.8 143 62.9
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 62.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.5e-48 196.4 140 65.0
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.5e-48 196.4 141 61.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.5e-48 196.4 147 61.9
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.5e-48 196.4 144 63.2
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.5e-48 195.7 146 62.3
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.3e-48 195.3 146 61.0
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.3e-48 195.3 146 61.0
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 4.3e-48 194.9 151 60.9
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.3e-48 194.9 146 61.6
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 4.3e-48 194.9 147 61.9
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.4e-48 194.1 146 60.3
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 7.4e-48 194.1 138 63.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 9.6e-48 193.7 137 65.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.3e-47 193.4 143 60.1
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.3e-47 193.4 143 62.9
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-47 193.0 142 64.8
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.6e-47 193.0 142 64.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.1e-47 192.6 141 60.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.8e-47 192.2 136 62.5
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 3.7e-47 191.8 146 62.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 4.8e-47 191.4 162 56.8
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.8e-47 191.4 144 61.8
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 6.2e-47 191.0 143 62.2
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 6.2e-47 191.0 144 61.1
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 6.2e-47 191.0 136 64.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 8.2e-47 190.7 144 60.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 61.5
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.1e-46 190.3 136 62.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-46 190.3 141 61.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-46 189.5 130 65.4
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.8e-46 189.5 142 61.3
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.4e-46 189.1 174 54.6
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.4e-46 189.1 141 63.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.1e-46 188.7 141 61.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.1e-46 188.7 141 61.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 4.0e-46 188.3 134 61.2
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 5.3e-46 188.0 165 55.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 6.9e-46 187.6 140 60.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.0e-46 187.2 141 59.6
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.2e-45 186.8 140 62.1
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.5e-45 186.4 140 62.1
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.6e-45 185.7 144 60.4
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.6e-45 185.7 141 58.9
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.6e-45 185.7 141 58.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.6e-45 185.7 146 57.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.5e-45 184.9 139 59.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.2e-44 182.6 147 58.5
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.2e-44 182.6 138 60.9
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.2e-44 182.6 140 61.4
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.2e-44 182.6 136 61.8
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.9e-44 182.2 136 61.8
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 4.9e-44 181.4 121 67.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.9e-44 181.4 121 65.3
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.4e-43 179.9 143 58.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.5e-43 179.1 121 66.9
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.5e-43 179.1 143 57.3
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 4.2e-43 178.3 140 57.9
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 5.5e-43 177.9 137 58.4
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 7.1e-43 177.6 121 65.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 7.1e-43 177.6 117 68.4
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.2e-42 176.8 138 59.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.2e-42 176.8 147 59.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 3.5e-42 175.3 134 58.2
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 4.6e-42 174.9 147 58.5
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.0e-41 172.2 122 63.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 8.7e-41 170.6 124 62.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.5e-40 169.1 116 66.4
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.5e-40 169.1 134 56.7
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.5e-40 169.1 143 58.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-39 166.8 116 64.7
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 3.7e-39 165.2 210 43.3
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.4e-37 158.7 111 65.8
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.0e-36 157.1 140 52.9
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.2e-36 156.0 108 63.9
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.9e-35 152.9 114 57.0
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.2e-35 152.1 125 56.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.2e-35 152.1 125 56.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-33 146.4 98 66.3
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 9.7e-32 140.6 127 52.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-31 139.4 140 49.3
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.6e-29 132.5 126 50.8
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.7e-29 131.0 99 60.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.3e-28 130.2 131 48.1
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-28 129.8 99 58.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 9.4e-27 124.0 85 63.5
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 7.9e-26 120.9 131 45.8
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.4e-25 120.2 126 49.2
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.1e-24 117.1 93 55.9
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-24 116.7 127 48.0
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 9.7e-24 114.0 142 40.8
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.4e-22 109.4 137 40.9
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.2e-21 107.1 133 41.4
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-21 105.5 134 39.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.5e-20 100.9 139 40.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.0e-17 94.0 132 38.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.4e-17 93.6 112 42.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-17 93.2 81 54.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 5.2e-17 91.7 117 41.9
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 7.0e-14 81.3 100 43.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.6e-13 79.3 87 43.7
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-12 76.3 58 60.3
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-12 76.3 58 60.3
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-12 76.3 58 60.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.9e-12 75.9 58 60.3
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.9e-12 75.9 54 57.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 8.8e-09 64.3 121 32.2
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.0e-08 63.2 49 51.0
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 6.3e-07 58.2 66 45.5
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 9.1e-06 54.3 63 49.2


User provided reference genes

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