Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 8.1e-79 297.0 146 100.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-64 250.0 146 82.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.3e-55 219.9 146 70.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 4.0e-54 214.9 146 69.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 9.0e-54 213.8 146 68.5
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.4e-53 211.8 144 68.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.1e-51 206.8 146 67.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-51 206.1 146 65.8
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 4.2e-51 204.9 144 64.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 7.1e-51 204.1 143 68.5
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.2e-50 203.4 146 66.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.6e-50 203.0 146 68.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.0e-49 200.3 146 65.1
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.3e-49 199.9 143 65.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 3.0e-49 198.7 141 66.0
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.1e-49 198.0 144 66.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 8.7e-49 197.2 146 63.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.9e-48 196.1 143 64.3
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.5e-48 195.7 142 65.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 2.5e-48 195.7 141 65.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.3e-48 195.3 147 63.9
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.6e-48 194.5 138 67.4
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 5.6e-48 194.5 146 65.1
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.4e-48 194.1 138 63.8
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.6e-48 193.7 140 65.7
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.3e-47 193.4 143 64.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.3e-47 193.4 139 64.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.3e-47 193.4 140 62.9
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.3e-47 193.4 146 64.4
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.1e-47 192.6 144 63.9
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 2.1e-47 192.6 141 63.1
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-47 192.6 141 63.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.1e-47 192.6 143 63.6
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.8e-47 192.2 143 62.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 2.8e-47 192.2 142 63.4
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.8e-47 192.2 141 65.2
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.8e-47 192.2 143 62.9
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.7e-47 191.8 143 62.9
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.7e-47 191.8 143 62.9
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 3.7e-47 191.8 145 64.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 4.8e-47 191.4 146 61.6
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 4.8e-47 191.4 145 64.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.8e-47 191.4 143 63.6
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 6.2e-47 191.0 146 60.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.2e-47 191.0 141 63.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.2e-47 191.0 138 63.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 62.9
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 62.9
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 8.2e-47 190.7 140 65.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.1e-46 190.3 136 64.0
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.1e-46 190.3 143 63.6
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.4e-46 189.9 142 64.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-46 189.9 142 62.7
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.4e-46 189.9 141 64.5
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.8e-46 189.5 140 62.1
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.8e-46 189.5 140 61.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.1e-46 188.7 143 62.2
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.0e-46 188.3 142 62.0
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.0e-46 188.3 146 62.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.0e-46 188.3 138 63.0
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.0e-46 188.3 138 63.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 4.0e-46 188.3 136 64.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.0e-46 188.3 144 61.8
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.3e-46 188.0 142 63.4
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 5.3e-46 188.0 146 61.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 9.0e-46 187.2 147 63.3
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 9.0e-46 187.2 143 60.8
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 9.0e-46 187.2 143 61.5
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 9.0e-46 187.2 141 63.1
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.0e-46 187.2 144 63.2
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 9.0e-46 187.2 141 62.4
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 9.0e-46 187.2 139 61.9
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-45 186.8 143 61.5
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-45 186.8 140 63.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.2e-45 186.8 140 63.6
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.0e-45 186.0 136 64.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.6e-45 185.7 138 61.6
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.4e-45 185.3 146 62.3
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.4e-45 185.3 146 62.3
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.4e-45 185.3 140 62.9
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 4.5e-45 184.9 135 64.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 5.8e-45 184.5 148 60.8
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 5.8e-45 184.5 143 62.2
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.0e-44 183.7 138 63.8
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.0e-44 183.7 146 60.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.3e-44 183.3 144 61.1
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.7e-44 183.0 143 60.1
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.9e-44 182.2 128 65.6
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.8e-44 181.8 145 62.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 4.9e-44 181.4 159 56.6
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 8.4e-44 180.6 140 60.7
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.4e-43 179.9 143 60.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.5e-43 179.1 130 63.8
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.5e-43 179.1 136 62.5
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.2e-43 178.7 140 60.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 3.2e-43 178.7 141 61.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.2e-43 178.7 136 61.0
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 4.2e-43 178.3 134 64.2
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 5.5e-43 177.9 161 55.3
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 9.3e-43 177.2 146 58.9
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.3e-43 177.2 136 61.0
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.3e-43 177.2 144 58.3
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.6e-42 176.4 127 64.6
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.1e-42 176.0 147 57.8
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.1e-42 176.0 140 60.7
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.7e-42 175.6 146 58.9
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.6e-42 174.9 136 59.6
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.6e-42 174.9 138 60.1
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.9e-42 174.1 130 62.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.3e-41 173.3 143 57.3
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.8e-41 172.9 140 56.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 5.1e-41 171.4 171 52.6
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-40 169.9 140 57.1
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.5e-40 169.9 137 56.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.3e-40 168.7 116 67.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.3e-40 168.7 143 56.6
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 7.4e-40 167.5 134 56.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.6e-39 166.4 116 65.5
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.6e-39 166.4 139 56.1
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.8e-39 165.6 141 57.4
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.1e-38 163.7 117 65.0
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 2.4e-38 162.5 206 44.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 2.4e-38 162.5 122 61.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-38 161.8 145 55.9
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.5e-37 159.8 145 54.5
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.0e-37 159.5 115 65.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.6e-37 159.1 143 55.9
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.7e-36 156.4 134 56.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.8e-36 155.2 141 52.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.8e-36 155.2 111 65.8
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 5.5e-35 151.4 109 64.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.7e-34 149.1 114 57.0
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.9e-33 145.2 99 66.7
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 54.4
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 54.4
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 4.5e-29 131.7 140 48.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-28 130.6 99 62.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 2.2e-28 129.4 99 60.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 5.0e-28 128.3 145 45.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.5e-27 125.9 131 48.9
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.5e-27 124.8 127 49.6
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.8e-25 119.8 93 59.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.5e-24 116.7 85 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.4e-24 115.2 131 43.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.2e-23 112.8 126 45.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 4.1e-22 108.6 138 39.9
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 9.1e-22 107.5 133 39.8
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.2e-21 107.1 141 43.3
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-21 106.7 131 48.1
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.6e-21 105.9 142 40.8
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.5e-20 100.9 134 39.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.0e-17 94.0 113 43.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.9e-17 92.0 145 36.6
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 8.8e-17 90.9 59 66.1
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 8.8e-17 90.9 67 59.7
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.0e-13 79.7 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 5.0e-12 75.1 87 41.4
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 5.0e-12 75.1 99 42.4
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-10 69.3 51 58.8
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-10 69.3 51 58.8
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-10 69.3 51 58.8
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 3.6e-10 68.9 51 58.8
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 4.0e-09 65.5 49 59.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.8e-07 59.3 112 34.8
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 39 61.5


User provided reference genes

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