Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.0e-181 639.0 331 100.0
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.0e-141 506.1 326 78.8
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.3e-140 503.4 307 80.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.2e-140 502.7 307 80.1
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 4.9e-140 501.5 310 80.3
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 8.4e-140 500.7 311 78.1
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.1e-139 500.4 330 74.8
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.4e-139 499.2 326 78.5
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.2e-139 498.8 301 82.1
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 9.2e-139 497.3 326 77.9
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.6e-138 496.5 296 84.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 3.5e-138 495.4 307 80.5
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.5e-138 495.4 325 77.8
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.3e-137 492.7 292 83.6
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.3e-137 492.7 288 84.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 2.3e-137 492.7 309 80.3
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 5.1e-137 491.5 326 77.9
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.5e-136 490.0 310 79.4
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 7.3e-136 487.6 301 81.4
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 7.3e-136 487.6 304 79.6
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 7.3e-136 487.6 296 79.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 7.3e-136 487.6 334 76.0
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 9.6e-136 487.3 323 77.1
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.2e-135 486.9 311 78.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.2e-135 486.9 315 79.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.6e-135 486.5 304 79.3
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.1e-135 486.1 310 78.7
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.1e-135 486.1 297 79.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.1e-135 486.1 324 76.9
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.8e-135 485.7 299 79.6
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 8.1e-135 484.2 301 81.1
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-134 483.4 301 79.7
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.8e-134 483.0 301 80.1
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.4e-134 482.6 310 78.7
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.1e-134 482.3 301 81.1
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 6.8e-134 481.1 308 78.9
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.2e-133 480.3 329 73.6
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.2e-133 480.3 310 78.4
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.2e-133 480.3 326 73.0
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.0e-133 479.6 324 76.2
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.6e-133 479.2 299 79.6
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.6e-133 479.2 299 78.6
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 7.6e-133 477.6 312 77.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 7.6e-133 477.6 297 79.5
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.2e-132 476.1 319 77.1
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 1.1e-131 473.8 307 76.5
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 2.4e-131 472.6 290 80.0
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 4.2e-131 471.9 289 80.3
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 4.2e-131 471.9 319 75.2
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 4.2e-131 471.9 295 79.7
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.2e-130 470.3 289 79.9
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.6e-130 469.9 297 79.1
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 1.6e-130 469.9 289 80.3
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.7e-130 469.2 316 75.6
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 3.5e-130 468.8 289 79.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.7e-129 466.5 289 78.5
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 3.0e-129 465.7 289 78.5
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 3.9e-129 465.3 301 76.7
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.5e-128 463.4 289 78.5
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.5e-128 463.4 289 78.5
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 1.9e-128 463.0 305 75.4
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 2.5e-128 462.6 322 73.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 4.3e-128 461.8 289 77.9
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.1e-127 459.5 263 85.6
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 2.8e-127 459.1 280 82.9
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.6e-127 458.8 365 67.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 4.8e-127 458.4 301 76.4
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.0e-126 455.3 389 63.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 5.3e-126 454.9 279 80.3
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.0e-125 453.0 336 72.3
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.0e-125 453.0 318 72.0
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 7.6e-125 451.1 297 78.5
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.4e-123 446.8 290 76.6
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.9e-123 446.4 302 73.5
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 4.2e-123 445.3 330 70.3
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.2e-123 445.3 301 74.4
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.1e-122 443.0 275 80.0
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.1e-122 443.0 315 71.4
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.0e-121 440.7 298 73.5
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 2.3e-121 439.5 297 74.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 3.9e-121 438.7 287 74.9
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.2e-114 417.2 446 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 3.5e-114 415.6 336 64.6
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 5.1e-113 411.8 261 77.8
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.4e-110 403.7 277 72.9
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.9e-107 393.3 281 71.9
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.5e-106 389.0 408 53.9
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 6.0e-106 388.3 301 69.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.0e-105 387.5 323 60.4
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 6.7e-105 384.8 345 60.0
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.6e-103 380.2 294 67.0
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.1e-103 379.8 292 69.5
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 4.8e-103 378.6 245 76.7
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 7.6e-101 371.3 291 67.4
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 6.1e-98 361.7 341 56.3
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.8e-97 360.1 242 74.4
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 4.8e-95 352.1 333 58.6
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 5.9e-85 318.5 195 82.6
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.3e-84 317.4 189 82.5
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.9e-83 313.5 198 79.8
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.9e-83 313.5 196 81.1
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 9.4e-83 311.2 220 74.1
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.6e-80 303.1 305 49.8
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 2.8e-79 299.7 355 50.4
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.6e-77 293.1 203 73.9
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 5.0e-76 288.9 293 56.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.0e-74 281.6 213 68.5
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.8e-70 270.4 159 79.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 5.0e-68 262.3 160 78.8
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.7e-60 237.3 155 74.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 2.6e-56 223.4 163 72.4
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 1.2e-50 204.5 152 71.7
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 8.3e-39 165.2 101 78.2
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 9.2e-30 135.2 115 60.0
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.1e-28 129.4 115 57.4
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.1e-26 124.0 136 52.2
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 4.0e-25 119.8 94 62.8
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 6.8e-25 119.0 110 53.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 5.6e-19 99.4 92 57.6
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 8.9e-17 92.0 255 29.8
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.9e-15 87.0 69 63.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 3.8e-15 86.7 158 50.0
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 4.3e-11 73.2 35 97.1
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 1.1e-09 68.6 286 27.3
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 4.5e-08 63.2 77 51.9
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 1.9e-06 57.8 70 50.0


User provided reference genes

Program Settings