Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 9.0e-170 600.1 294 100.0
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.1e-110 402.9 285 65.6
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 9.8e-108 394.0 285 64.9
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.2e-105 387.1 287 65.5
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.5e-105 385.6 290 64.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.7e-105 384.4 290 62.4
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.0e-104 384.0 282 64.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.8e-104 382.1 290 62.4
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 5.0e-104 381.7 289 63.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.1e-102 376.3 279 64.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.6e-102 375.6 290 61.4
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.6e-102 375.6 276 63.4
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.7e-102 375.2 290 61.4
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.7e-102 375.2 276 63.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.4e-101 373.6 288 61.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.3e-101 372.9 281 63.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 4.0e-101 372.1 290 61.0
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.2e-101 371.7 290 59.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 8.9e-101 370.9 283 62.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.5e-100 370.2 276 62.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.0e-100 369.8 276 61.2
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.6e-100 369.4 284 60.6
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 3.4e-100 369.0 289 60.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.4e-100 369.0 284 61.3
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.5e-100 367.9 259 64.9
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.7e-99 366.7 291 60.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 2.2e-99 366.3 288 59.4
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 3.7e-99 365.5 291 60.1
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.4e-98 362.8 289 59.2
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.2e-98 362.5 265 63.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.4e-98 361.7 288 60.8
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 7.0e-98 361.3 277 61.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.0e-98 361.3 289 59.5
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-97 360.5 298 58.7
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.6e-97 360.1 271 61.3
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.0e-97 359.8 287 59.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.7e-97 359.4 285 60.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.0e-96 357.5 263 64.3
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.3e-96 356.3 293 58.0
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 3.0e-96 355.9 280 60.0
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.0e-96 355.1 292 59.2
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.5e-95 353.6 281 61.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.5e-95 353.6 286 60.8
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.6e-95 351.7 292 57.5
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.6e-94 350.1 278 58.3
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.1e-94 349.7 234 68.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.6e-94 349.0 288 58.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.1e-93 345.9 289 59.5
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.1e-93 345.9 291 60.1
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.1e-93 345.9 283 56.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 4.0e-93 345.5 288 57.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 6.8e-93 344.7 288 57.6
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.8e-93 344.7 289 58.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 8.9e-93 344.4 277 59.6
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.5e-92 343.6 281 57.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 4.4e-92 342.0 278 56.8
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.3e-91 340.5 246 61.8
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.3e-91 340.5 280 58.6
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.9e-91 339.3 292 56.5
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.9e-91 339.3 293 57.7
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.7e-91 339.0 288 56.6
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 6.4e-91 338.2 281 56.9
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.1e-90 337.4 242 62.4
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.4e-90 337.0 284 59.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.9e-90 336.7 284 55.3
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 5.4e-90 335.1 284 56.0
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 5.4e-90 335.1 285 55.1
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.4e-90 335.1 268 59.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.4e-90 335.1 282 56.4
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.2e-89 334.0 290 55.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.0e-89 333.2 248 60.9
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.0e-89 333.2 278 56.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.5e-89 332.4 267 58.8
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.5e-89 332.4 248 60.5
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 6.0e-89 331.6 289 55.4
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 5.0e-88 328.6 270 57.4
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.1e-87 327.4 289 55.4
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.5e-87 327.0 267 58.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.2e-86 323.9 276 55.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.0e-84 316.6 310 50.6
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.5e-84 314.7 246 60.2
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.3e-83 313.9 267 56.9
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 3.0e-80 302.8 250 56.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.9e-79 300.1 289 52.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.9e-79 300.1 280 51.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.9e-79 300.1 285 54.0
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.3e-79 299.3 283 51.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 5.6e-79 298.5 269 50.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 9.5e-79 297.7 282 52.1
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 3.6e-78 295.8 282 50.4
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.4e-74 283.1 235 57.0
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.2e-70 270.8 290 47.6
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.6e-70 270.4 284 47.5
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-70 269.6 278 48.2
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.8e-70 269.6 259 51.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 4.7e-70 268.9 259 47.9
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 6.2e-70 268.5 290 47.9
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-69 267.7 269 49.4
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.8e-69 266.9 286 47.6
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.0e-69 265.8 253 48.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 6.9e-69 265.0 284 47.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 6.9e-69 265.0 284 47.2
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 8.9e-69 264.6 289 47.1
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-68 263.8 285 47.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.8e-68 261.9 294 48.0
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-67 260.4 291 47.1
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 6.4e-67 258.5 288 46.5
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-66 257.7 287 45.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.4e-66 256.5 244 47.5
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-65 252.7 261 48.7
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 4.6e-65 252.3 286 45.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.0e-64 251.1 285 47.0
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.2e-62 241.9 270 50.4
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.9e-59 233.0 268 42.5
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.4e-53 213.4 285 41.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.0e-48 198.0 191 46.1
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.1e-47 194.5 307 34.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.5e-47 194.1 195 47.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.7e-46 189.5 203 44.3
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-45 188.0 224 41.5
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 3.1e-45 186.4 267 39.3
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-42 176.8 279 41.2
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-40 171.0 176 50.0
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-39 167.9 174 47.7
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.4e-39 165.2 176 50.0
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 7.4e-39 165.2 245 41.6
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-38 164.5 177 47.5
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-38 164.1 217 44.7
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-36 157.9 240 40.4
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 3.2e-34 149.8 196 40.8
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.6e-33 147.5 196 40.8
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-33 147.1 280 37.9
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 4.6e-33 146.0 196 39.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 5.7e-31 139.0 139 48.2
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-30 137.9 179 44.1
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.2e-30 135.2 81 71.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.2e-30 135.2 140 45.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 5.9e-28 129.0 139 47.5
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-26 124.8 176 42.6
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-26 124.8 176 42.6
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 5.3e-21 105.9 188 31.4
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.6e-20 103.6 177 35.0
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 5.2e-16 89.4 62 61.3
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 5.2e-16 89.4 62 61.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 6.7e-16 89.0 79 50.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 7.4e-15 85.5 147 38.8
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.0e-12 77.4 67 49.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.0e-08 65.1 100 38.0
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 3.3e-07 60.1 146 26.7


User provided reference genes

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